*ë
Ï_Z9c       sk      d  k  Z   d  k Z  d k l Z  d k l Z 
 d f  d „  ƒ  YZ > d f  d „  ƒ  YZ d  S(   N(   s   Seq(   s	   SeqRecords   FastaReaderc      s2   
  e  i i d „ Z  d „  Z 6 d „  Z RS(   Nc    s{     | |  _   | |  _  | i ƒ  }  x/  | o | d d j o  | i ƒ  } q0 W | |  _  d |  _ d  S(   Ni    s   >(   s   infiles   selfs   alphabets   readlines   lines
   _lookaheads   _n(   s   selfs   infiles   alphabets   line(    (    s(   /mit/seven/lib/python/Bio/SeqIO/FASTA.pys   __init__ s    c    sP    |  i d |  _  |  i }  | o  t Sn ! t i | d d !t d ƒ } " t | ƒ d j o # | } $ d } n & | \ } } ( g  } ) |  i i ƒ  } * xR * | oG + | d d j o , Pn - | i | d  ƒ . |  i i ƒ  } q´ W0 | |  _ 3 t t t i | d ƒ |  i ƒ 4 d | d | d | ƒSd  S(   Ni   s    i    s   >s   ids   names   description(   s   selfs   _ns
   _lookaheads   lines   Nones   strings   splits   xs   lens   ids   descs   liness   infiles   readlines   appends	   SeqRecords   Seqs   joins   alphabet(   s   selfs   descs   ids   lines   xs   lines(    (    s(   /mit/seven/lib/python/Bio/SeqIO/FASTA.pys   next s(    		 
!c    s^   6 8 t  o | |  i j p t ‚ 9 |  i ƒ  } : | t j o ; t | ‚ n < | Sd  S(   N(	   s	   __debug__s   is   selfs   _ns   AssertionErrors   nexts   xs   Nones
   IndexError(   s   selfs   is   x(    (    s(   /mit/seven/lib/python/Bio/SeqIO/FASTA.pys   __getitem__6 s
   !(   s   Bios   Alphabets   generic_alphabets   __init__s   nexts   __getitem__(    (    (    s(   /mit/seven/lib/python/Bio/SeqIO/FASTA.pys   FastaReader
 s   s   FastaWriterc      sA   > ? d „  Z  B d „  Z P d „  Z U d „  Z X d „  Z RS(   Nc    s   ? @ | |  _  d  S(   N(   s   outfiles   self(   s   selfs   outfile(    (    s(   /mit/seven/lib/python/Bio/SeqIO/FASTA.pys   __init__? s   c    s×   B C | i } D t o d | j p t ‚ F | i } G t o d | j p t ‚ I |  i i d | | f ƒ K | i i	 ƒ  } L xG t d t | ƒ d ƒ d L r( } M |  i i | | | d !d ƒ q¤ Wd  S(   Ns   
s   >%s %s
i    i<   (   s   records   ids	   __debug__s   AssertionErrors   descriptions   selfs   outfiles   writes   seqs   tostrings   datas   ranges   lens   i(   s   selfs   records   ids   datas   is   description(    (    s(   /mit/seven/lib/python/Bio/SeqIO/FASTA.pys   writeB s    	c    s0   P R x# |  d R r } S t i | ƒ q Wd  S(   Ni    (   s   recordss   records   selfs   write(   s   recordss   record(    (    s(   /mit/seven/lib/python/Bio/SeqIO/FASTA.pys   write_recordsP s    	c    s   U V |  i i ƒ  Sd  S(   N(   s   selfs   outfiles   close(   s   self(    (    s(   /mit/seven/lib/python/Bio/SeqIO/FASTA.pys   closeU s   c    s   X Y |  i i ƒ  Sd  S(   N(   s   selfs   outfiles   flush(   s   self(    (    s(   /mit/seven/lib/python/Bio/SeqIO/FASTA.pys   flushX s   (   s   __init__s   writes   write_recordss   closes   flush(    (    (    s(   /mit/seven/lib/python/Bio/SeqIO/FASTA.pys   FastaWriter> s
   (	   s   strings   Bio.Alphabets   Bios   Bio.Seqs   Seqs   Bio.SeqRecords	   SeqRecords   FastaReaders   FastaWriter(   s   FastaWriters	   SeqRecords   Seqs   strings   Bios   FastaReader(    (    s(   /mit/seven/lib/python/Bio/SeqIO/FASTA.pys   ? s
   4