/***************************************************************************** * gbfeatdfn.h: * -- GenBank Feature table define file * * $Log: gbftdef.h,v $ * Revision 6.10 2001/04/10 22:17:03 tatiana * GBQUAL_endogenous_virus backed off to /note * * Revision 6.9 2001/04/10 21:59:17 tatiana * GBQUAL_endogenous_virus added * * Revision 6.8 2000/11/29 20:34:29 tatiana * virion key removed, GBQUAL_transcript_id added * * Revision 6.7 2000/02/02 21:02:41 tatiana * new type for /number added * * Revision 6.6 2000/01/21 21:06:44 kans * reverted qualifiers, just added organelle, so parser can deal with old and new form during transition * * Revision 6.5 2000/01/21 20:48:19 kans * changes to merge several source qualifiers under new organelle qualifier * * Revision 6.4 1999/02/05 15:40:39 tatiana * GBQUAL_country added * * Revision 6.3 1999/01/29 16:18:58 tatiana * protein_id qualifier added to CDS * * Revision 6.2 1998/04/30 21:43:11 tatiana * *** empty log message *** * * Revision 6.1 1997/12/23 23:39:00 kans * raised ParFlat_TOTAL_GBQUAL, added GBQUAL_focus and GBQUAL_specimen_voucher * * Revision 6.0 1997/08/25 18:05:59 madden * Revision changed to 6.0 * * Revision 5.7 1997/07/29 20:59:52 vakatov * Encapsulated 'ParFlat_GBQual_names' and 'ParFlat_GBFeat'(formerly * global) variables into access functions. Made other global variables * be "extern" instead of "NLM_EXTERN"(i.e. local within the PC DLL). * * Revision 5.6 1997/06/19 18:37:59 vakatov * [WIN32,MSVC++] Adopted for the "NCBIOBJ.LIB" DLL'ization * * Revision 5.5 1996/09/17 14:50:43 tatiana * 'virion' added, number of quals increased to 50 * * Revision 5.4 1996/08/02 16:50:30 tatiana * a typo fixed * * Revision 5.3 1996/07/30 17:28:07 kans * ParFlat_... arrays now external in header file * * Revision 5.2 1996/07/29 19:44:57 tatiana * GBQual_names changed to use a structure * * Revision 5.1 1996/07/25 14:18:15 tatiana * added qualifiers: allele, exception, replace * * Revision 4.4 1995/11/13 15:53:11 tatiana * serotype added * * Revision 4.3 1995/11/08 22:58:20 tatiana * serotype added * * Revision 4.2 1995/08/19 03:08:06 tatiana * *** empty log message *** * * Revision 4.1 1995/08/15 22:06:29 tatiana * db_xref added * * Revision 1.2 1995/05/15 21:46:05 ostell * added Log line * * * 10-14-93 ******************************************************************************/ #ifndef _GBFEATDFN_ #define _GBFEATDFN_ #define GBQUAL_allele 0 #define GBQUAL_anticodon 1 #define GBQUAL_bound_moiety 2 #define GBQUAL_cell_line 3 #define GBQUAL_cell_type 4 #define GBQUAL_chromosome 5 #define GBQUAL_chloroplast 6 #define GBQUAL_chromoplast 7 #define GBQUAL_citation 8 #define GBQUAL_clone 9 #define GBQUAL_clone_lib 10 #define GBQUAL_codon 11 #define GBQUAL_codon_start 12 #define GBQUAL_cons_splice 13 #define GBQUAL_cultivar 14 #define GBQUAL_cyanelle 15 #define GBQUAL_db_xref 16 #define GBQUAL_dev_stage 17 #define GBQUAL_direction 18 #define GBQUAL_EC_number 19 #define GBQUAL_evidence 20 #define GBQUAL_exception 21 #define GBQUAL_frequency 22 #define GBQUAL_function 23 #define GBQUAL_gene 24 #define GBQUAL_gdb_xref 25 #define GBQUAL_germline 26 #define GBQUAL_haplotype 27 #define GBQUAL_insertion_seq 28 #define GBQUAL_isolate 29 #define GBQUAL_kinetoplast 30 #define GBQUAL_label 31 #define GBQUAL_lab_host 32 #define GBQUAL_map 33 #define GBQUAL_macronuclear 34 #define GBQUAL_mitochondrion 35 #define GBQUAL_mod_base 36 #define GBQUAL_note 37 #define GBQUAL_number 38 #define GBQUAL_organism 39 #define GBQUAL_partial 40 #define GBQUAL_PCR_conditions 41 #define GBQUAL_pop_variant 42 #define GBQUAL_phenotype 43 #define GBQUAL_plasmid 44 #define GBQUAL_product 45 #define GBQUAL_proviral 46 #define GBQUAL_pseudo 47 #define GBQUAL_rearranged 48 #define GBQUAL_replace 49 #define GBQUAL_rpt_family 50 #define GBQUAL_rpt_type 51 #define GBQUAL_rpt_unit 52 #define GBQUAL_sex 53 #define GBQUAL_sequenced_mol 54 #define GBQUAL_serotype 55 #define GBQUAL_specific_host 56 #define GBQUAL_standard_name 57 #define GBQUAL_strain 58 #define GBQUAL_sub_clone 59 #define GBQUAL_sub_species 60 #define GBQUAL_sub_strain 61 #define GBQUAL_tissue_lib 62 #define GBQUAL_tissue_type 63 #define GBQUAL_translation 64 #define GBQUAL_transl_except 65 #define GBQUAL_transl_table 66 #define GBQUAL_transposon 67 #define GBQUAL_usedin 68 #define GBQUAL_variety 69 #define GBQUAL_virion 70 #define GBQUAL_focus 71 #define GBQUAL_specimen_voucher 72 #define GBQUAL_protein_id 73 #define GBQUAL_country 74 #define GBQUAL_organelle 75 #define GBQUAL_transcript_id 76 #define ParFlat_TOTAL_GBQUAL 77 #define ParFlat_TOTAL_IntOr 3 #define ParFlat_TOTAL_LRB 3 #define ParFlat_TOTAL_Exp 2 #define ParFlat_TOTAL_Rpt 7 #define ParFlat_TOTAL_GBFEAT 63 #define Class_pos_aa 1 #define Class_text 2 #define Class_bracket_int 3 #define Class_seq_aa 4 #define Class_int_or 5 #define Class_site 6 #define Class_L_R_B 7 #define Class_ecnum 8 #define Class_exper 9 #define Class_none 10 #define Class_token 11 #define Class_int 12 #define Class_rpt 13 #define Class_flabel_base 14 #define Class_flabel_dbname 15 #define Class_note 16 #define Class_number 17 #define ParFlat_Stoken_type 1 #define ParFlat_BracketInt_type 2 #define ParFlat_Integer_type 3 #define ParFlat_Number_type 4 /*********************************************************************/ typedef struct sematic_gbfeature { CharPtr key; Int2 mand_num; Int2 mand_qual[5]; Int2 opt_num; Int2 opt_qual[50]; } SematicFeat, PNTR SematicFeatPtr; typedef struct gbfeat_name { CharPtr name; Uint1 gbclass; } GbFeatName, PNTR GbFeatNamePtr; #undef NLM_EXTERN #ifdef NLM_IMPORT #define NLM_EXTERN NLM_IMPORT #else #define NLM_EXTERN extern #endif NLM_EXTERN GbFeatNamePtr x_ParFlat_GBQual_names PROTO((void)); #define ParFlat_GBQual_names x_ParFlat_GBQual_names() NLM_EXTERN SematicFeatPtr x_ParFlat_GBFeat PROTO((void)); #define ParFlat_GBFeat x_ParFlat_GBFeat() extern CharPtr ParFlat_IntOrString [ParFlat_TOTAL_IntOr]; extern CharPtr ParFlat_LRBString [ParFlat_TOTAL_LRB]; extern CharPtr ParFlat_ExpString [ParFlat_TOTAL_Exp]; extern CharPtr ParFlat_RptString [ParFlat_TOTAL_Rpt]; #undef NLM_EXTERN #ifdef NLM_EXPORT #define NLM_EXTERN NLM_EXPORT #else #define NLM_EXTERN #endif #endif