/* objmime.h * =========================================================================== * * PUBLIC DOMAIN NOTICE * National Center for Biotechnology Information * * This software/database is a "United States Government Work" under the * terms of the United States Copyright Act. It was written as part of * the author's official duties as a United States Government employee and * thus cannot be copyrighted. This software/database is freely available * to the public for use. The National Library of Medicine and the U.S. * Government have not placed any restriction on its use or reproduction. * * Although all reasonable efforts have been taken to ensure the accuracy * and reliability of the software and data, the NLM and the U.S. * Government do not and cannot warrant the performance or results that * may be obtained by using this software or data. The NLM and the U.S. * Government disclaim all warranties, express or implied, including * warranties of performance, merchantability or fitness for any particular * purpose. * * Please cite the author in any work or product based on this material. * * =========================================================================== * * File Name: objmime.h * * Modifications: * -------------------------------------------------------------------------- * Date Name Description of modification * ------- ---------- ----------------------------------------------------- * * $Log: objmime.h,v $ * Revision 6.11 2001/11/21 16:38:23 thiessen * move cn3d stuff into bundle * * Revision 6.10 2001/11/21 14:25:41 thiessen * remove BisotrucOrId * * Revision 6.9 2001/11/20 15:59:34 thiessen * add imports to BundleSeqsAligns * * Revision 6.8 2001/11/16 14:54:26 thiessen * add new general type * * Revision 6.7 2001/06/21 14:44:29 thiessen * add new user annotations * * Revision 6.6 2001/06/14 14:21:33 thiessen * add style dictionary to mime blobs * * Revision 6.5 1998/12/07 17:41:05 kans * restored hand changes from struct_Seq_annot to seqannot - needed because of limitation of asncode * * Revision 6.4 1998/12/07 16:29:29 ywang * add object loaded for mime type Biostruc-seqs * * ========================================================================== */ #ifndef _objmime_ #define _objmime_ #undef NLM_EXTERN #ifdef NLM_IMPORT #define NLM_EXTERN NLM_IMPORT #else #define NLM_EXTERN extern #endif #ifdef __cplusplus extern "C" { /* } */ #endif /************************************************** * * Generated objects for Module NCBI-Mime * Generated using ASNCODE Revision: 6.5 at Dec 4, 1998 2:11 PM * **************************************************/ NLM_EXTERN Boolean LIBCALL objmimeAsnLoad PROTO((void)); typedef ValNodePtr NcbiMimeAsn1Ptr; typedef ValNode NcbiMimeAsn1; #define NcbiMimeAsn1_entrez 1 #define NcbiMimeAsn1_alignstruc 2 #define NcbiMimeAsn1_alignseq 3 /* yanli added */ #define NcbiMimeAsn1_strucseq 4 /* yanli added */ #define NcbiMimeAsn1_strucseqs 5 /* yanli added */ #define NcbiMimeAsn1_general 6 /* paul */ NLM_EXTERN NcbiMimeAsn1Ptr LIBCALL NcbiMimeAsn1Free PROTO ((NcbiMimeAsn1Ptr )); NLM_EXTERN NcbiMimeAsn1Ptr LIBCALL NcbiMimeAsn1AsnRead PROTO (( AsnIoPtr, AsnTypePtr)); NLM_EXTERN Boolean LIBCALL NcbiMimeAsn1AsnWrite PROTO (( NcbiMimeAsn1Ptr , AsnIoPtr, AsnTypePtr)); /************************************************** * * EntrezGeneral * **************************************************/ typedef struct struct_Entrez_general { CharPtr title; ValNodePtr Data_data; Uint2 style; CharPtr location; } EntrezGeneral, PNTR EntrezGeneralPtr; NLM_EXTERN EntrezGeneralPtr LIBCALL EntrezGeneralFree PROTO ((EntrezGeneralPtr )); NLM_EXTERN EntrezGeneralPtr LIBCALL EntrezGeneralNew PROTO (( void )); NLM_EXTERN EntrezGeneralPtr LIBCALL EntrezGeneralAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); NLM_EXTERN Boolean LIBCALL EntrezGeneralAsnWrite PROTO (( EntrezGeneralPtr , AsnIoPtr, AsnTypePtr)); #ifdef NLM_GENERATED_CODE_PROTO typedef ValNodePtr Data_dataPtr; typedef ValNode Data_data; #endif /* NLM_GENERATED_CODE_PROTO */ #define Data_data_ml 1 #define Data_data_prot 2 #define Data_data_nuc 3 #define Data_data_genome 4 #define Data_data_structure 5 #define Data_data_strucAnnot 6 #ifdef NLM_GENERATED_CODE_PROTO static Data_dataPtr LIBCALL Data_dataFree PROTO ((Data_dataPtr )); static Data_dataPtr LIBCALL Data_dataAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); static Boolean LIBCALL Data_dataAsnWrite PROTO (( Data_dataPtr , AsnIoPtr, AsnTypePtr)); #endif /* NLM_GENERATED_CODE_PROTO */ /************************************************** * * BiostrucAlign * **************************************************/ typedef struct struct_Biostruc_align { struct struct_Biostruc PNTR master; struct struct_Biostruc PNTR slaves; struct struct_Biostruc_annot_set PNTR alignments; ValNodePtr sequences; struct seqannot PNTR seqalign; /* hand change -- lyg */ struct struct_Cn3d_style_dictionary PNTR style_dictionary; /* paul */ struct struct_Cn3d_user_annotations PNTR user_annotations; } BiostrucAlign, PNTR BiostrucAlignPtr; NLM_EXTERN BiostrucAlignPtr LIBCALL BiostrucAlignFree PROTO ((BiostrucAlignPtr )); NLM_EXTERN BiostrucAlignPtr LIBCALL BiostrucAlignNew PROTO (( void )); NLM_EXTERN BiostrucAlignPtr LIBCALL BiostrucAlignAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); NLM_EXTERN Boolean LIBCALL BiostrucAlignAsnWrite PROTO (( BiostrucAlignPtr , AsnIoPtr, AsnTypePtr)); /************************************************** * * BiostrucAlignSeq * **************************************************/ typedef struct struct_Biostruc_align_seq { ValNodePtr sequences; struct seqannot PNTR seqalign; /* hand change struct -- lyg */ struct struct_Cn3d_style_dictionary PNTR style_dictionary; /* paul */ struct struct_Cn3d_user_annotations PNTR user_annotations; } BiostrucAlignSeq, PNTR BiostrucAlignSeqPtr; NLM_EXTERN BiostrucAlignSeqPtr LIBCALL BiostrucAlignSeqFree PROTO ((BiostrucAlignSeqPtr )); NLM_EXTERN BiostrucAlignSeqPtr LIBCALL BiostrucAlignSeqNew PROTO (( void )); NLM_EXTERN BiostrucAlignSeqPtr LIBCALL BiostrucAlignSeqAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); NLM_EXTERN Boolean LIBCALL BiostrucAlignSeqAsnWrite PROTO (( BiostrucAlignSeqPtr , AsnIoPtr, AsnTypePtr)); /************************************************** * * BiostrucSeq * **************************************************/ typedef struct struct_Biostruc_seq { struct struct_Biostruc PNTR structure; ValNodePtr sequences; struct struct_Cn3d_style_dictionary PNTR style_dictionary; /* paul */ struct struct_Cn3d_user_annotations PNTR user_annotations; } BiostrucSeq, PNTR BiostrucSeqPtr; NLM_EXTERN BiostrucSeqPtr LIBCALL BiostrucSeqFree PROTO ((BiostrucSeqPtr )); NLM_EXTERN BiostrucSeqPtr LIBCALL BiostrucSeqNew PROTO (( void )); NLM_EXTERN BiostrucSeqPtr LIBCALL BiostrucSeqAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); NLM_EXTERN Boolean LIBCALL BiostrucSeqAsnWrite PROTO (( BiostrucSeqPtr , AsnIoPtr, AsnTypePtr)); /************************************************** * * BiostrucSeqs * **************************************************/ typedef struct struct_Biostruc_seqs { struct struct_Biostruc PNTR structure; ValNodePtr sequences; struct seqannot PNTR seqalign; /* hand change struct -- lyg */ struct struct_Cn3d_style_dictionary PNTR style_dictionary; /* paul */ struct struct_Cn3d_user_annotations PNTR user_annotations; } BiostrucSeqs, PNTR BiostrucSeqsPtr; NLM_EXTERN BiostrucSeqsPtr LIBCALL BiostrucSeqsFree PROTO ((BiostrucSeqsPtr )); NLM_EXTERN BiostrucSeqsPtr LIBCALL BiostrucSeqsNew PROTO (( void )); NLM_EXTERN BiostrucSeqsPtr LIBCALL BiostrucSeqsAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); NLM_EXTERN Boolean LIBCALL BiostrucSeqsAsnWrite PROTO (( BiostrucSeqsPtr , AsnIoPtr, AsnTypePtr)); /* following #defines are for enumerated type, not used by object loaders */ #define Entrez_style_docsum 1 #define Entrez_style_genbank 2 #define Entrez_style_genpept 3 #define Entrez_style_fasta 4 #define Entrez_style_asn1 5 #define Entrez_style_graphic 6 #define Entrez_style_alignment 7 #define Entrez_style_globalview 8 #define Entrez_style_report 9 #define Entrez_style_medlars 10 #define Entrez_style_embl 11 #define Entrez_style_pdb 12 #define Entrez_style_kinemage 13 /************************************************** * * BiostrucSeqsAlignsCdd * **************************************************/ typedef struct struct_Biostruc_seqs_aligns_cdd { ValNodePtr SeqAlignData_seq_align_data; struct struct_Biostruc PNTR structures; } BiostrucSeqsAlignsCdd, PNTR BiostrucSeqsAlignsCddPtr; NLM_EXTERN BiostrucSeqsAlignsCddPtr LIBCALL BiostrucSeqsAlignsCddFree PROTO ((BiostrucSeqsAlignsCddPtr )); NLM_EXTERN BiostrucSeqsAlignsCddPtr LIBCALL BiostrucSeqsAlignsCddNew PROTO (( void )); NLM_EXTERN BiostrucSeqsAlignsCddPtr LIBCALL BiostrucSeqsAlignsCddAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); NLM_EXTERN Boolean LIBCALL BiostrucSeqsAlignsCddAsnWrite PROTO (( BiostrucSeqsAlignsCddPtr , AsnIoPtr, AsnTypePtr)); #ifdef NLM_GENERATED_CODE_PROTO typedef ValNodePtr SeqAlignData_seq_align_dataPtr; typedef ValNode SeqAlignData_seq_align_data; #endif /* NLM_GENERATED_CODE_PROTO */ #define SeqAlignData_seq_align_data_bundle 1 #define SeqAlignData_seq_align_data_cdd 2 #ifdef NLM_GENERATED_CODE_PROTO static SeqAlignData_seq_align_dataPtr LIBCALL SeqAlignData_seq_align_dataFree PROTO ((SeqAlignData_seq_align_dataPtr )); static SeqAlignData_seq_align_dataPtr LIBCALL SeqAlignData_seq_align_dataAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); static Boolean LIBCALL SeqAlignData_seq_align_dataAsnWrite PROTO (( SeqAlignData_seq_align_dataPtr , AsnIoPtr, AsnTypePtr)); #endif /* NLM_GENERATED_CODE_PROTO */ /************************************************** * * BundleSeqsAligns * **************************************************/ typedef struct struct_Bundle_seqs_aligns { ValNodePtr sequences; struct struct_Seq_annot PNTR seqaligns; struct struct_Biostruc_annot_set PNTR strucaligns; struct struct_Seq_annot PNTR imports; struct struct_Cn3d_style_dictionary PNTR style_dictionary; struct struct_Cn3d_user_annotations PNTR user_annotations; } BundleSeqsAligns, PNTR BundleSeqsAlignsPtr; NLM_EXTERN BundleSeqsAlignsPtr LIBCALL BundleSeqsAlignsFree PROTO ((BundleSeqsAlignsPtr )); NLM_EXTERN BundleSeqsAlignsPtr LIBCALL BundleSeqsAlignsNew PROTO (( void )); NLM_EXTERN BundleSeqsAlignsPtr LIBCALL BundleSeqsAlignsAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); NLM_EXTERN Boolean LIBCALL BundleSeqsAlignsAsnWrite PROTO (( BundleSeqsAlignsPtr , AsnIoPtr, AsnTypePtr)); #ifdef __cplusplus /* { */ } #endif #endif /* _objmime_ */ #undef NLM_EXTERN #ifdef NLM_EXPORT #define NLM_EXTERN NLM_EXPORT #else #define NLM_EXTERN #endif