20.440 Analysis of Biological Networks
Spring 2017
Instructors: Paul C Blainey, Karthik Shekhar, Michael B Yaffe
TAs: Carles Boix, Erika Daphne Handly
Lecture: MW2-3.30,F2 (56-614)
Announcements
Slides from Lecture #16 have been posted on class website
Folks,
I have posted a PDF of the slides I used for Lecture #16, where we discussed transcriptional regulatory networks, ChIP, SAGE tags, edgeR, and DESeq. The slides setthe stage for part of the next homework.
-Prof. Yaffe
I have posted a PDF of the slides I used for Lecture #16, where we discussed transcriptional regulatory networks, ChIP, SAGE tags, edgeR, and DESeq. The slides setthe stage for part of the next homework.
-Prof. Yaffe
Announced on 08 April 2017 6:40 p.m. by Michael B Yaffe
20.440 Project 1st Draft due date postponed until April 19th
Folks,
As we discussed, we will give you an extra week to finish your first draft of the Project, and extend the due date until April 19th. If you have a first draft done by April 12th, the original due date, please turn it in then, as that will allow Prof. Blainey and I to review it and gives you more time to implement the changes we suggest. If not, then don't panic, and take until April 19th to finish it.
-Profs. Yaffe and Blainey.
As we discussed, we will give you an extra week to finish your first draft of the Project, and extend the due date until April 19th. If you have a first draft done by April 12th, the original due date, please turn it in then, as that will allow Prof. Blainey and I to review it and gives you more time to implement the changes we suggest. If not, then don't panic, and take until April 19th to finish it.
-Profs. Yaffe and Blainey.
Announced on 08 April 2017 6:33 p.m. by Michael B Yaffe
The Whyte paper for class on Wednesday has been posted, as has a Paper Reflection question
Please read the Whyte et al paper for class tomorrow and
complete the very brief reflection question. Apologies for
the late posting.
-Prof. Yaffe
-Prof. Yaffe
Announced on 04 April 2017 9:04 a.m. by Michael B Yaffe
The Subramanian et al paper on GSEA has been posted
Folks,
Erika and I have posted the Subramanian et al paper. If you downoaded it yesterday, please re-download it, as the version I have posted contains all the supplementary material. Because of the late posting, the write-up for the paper will not be due until FRIDAY, Match 17th.
-Prof. Yaffe
Erika and I have posted the Subramanian et al paper. If you downoaded it yesterday, please re-download it, as the version I have posted contains all the supplementary material. Because of the late posting, the write-up for the paper will not be due until FRIDAY, Match 17th.
-Prof. Yaffe
Announced on 14 March 2017 9:28 a.m. by Michael B Yaffe
Reading for Lecture#11 and Reflection assignment posted
I have posted the reading for Monday's lecture (Katz et al
paper), and a brief reflection question for you to answer.
The entire reading and question/assignment should take less than 1
hour to do.
-Prof. Yaffe
-Prof. Yaffe
Announced on 10 March 2017 9:38 p.m. by Michael B Yaffe
