*ė
ĮžD;c       sq     d  k  Z  d  k Z  d g Z 
 d f  d     YZ  e   Z  d e f d     YZ  d e f d     YZ  e   Z " d e f d	     YZ % e   Z	 ' d
 e f d     YZ
 * e
   Z / d e f d     YZ 2 e   Z 8 d e f d     YZ ; d e f d     YZ G d f  d     YZ T d e f d     YZ ] d e f d     YZ d  S(   Ns   IUPACs   Alphabetc      s/   
  e  Z  e  Z  d   Z  d   Z RS(   Nc    s     |  i i d Sd  S(   Ns   ()(   s   selfs	   __class__s   __name__(   s   self(    (    s.   /mit/seven/lib/python/Bio/Alphabet/__init__.pys   __repr__ s   c    s     t  | |  i  Sd  S(   N(   s
   isinstances   others   selfs	   __class__(   s   selfs   other(    (    s.   /mit/seven/lib/python/Bio/Alphabet/__init__.pys   contains s   (   s   Nones   sizes   letterss   __repr__s   contains(    (    (    s.   /mit/seven/lib/python/Bio/Alphabet/__init__.pys   Alphabet
 s   		s   SingleLetterAlphabetc      s     d Z   e Z RS(   Ni   (   s   sizes   Nones   letters(    (    (    s.   /mit/seven/lib/python/Bio/Alphabet/__init__.pys   SingleLetterAlphabet s   	s   ProteinAlphabetc      s     RS(   N(    (    (    (    s.   /mit/seven/lib/python/Bio/Alphabet/__init__.pys   ProteinAlphabet s   s   NucleotideAlphabetc      s   " # RS(   N(    (    (    (    s.   /mit/seven/lib/python/Bio/Alphabet/__init__.pys   NucleotideAlphabet" s   s   DNAAlphabetc      s   ' ( RS(   N(    (    (    (    s.   /mit/seven/lib/python/Bio/Alphabet/__init__.pys   DNAAlphabet' s   s   RNAAlphabetc      s   / 0 RS(   N(    (    (    (    s.   /mit/seven/lib/python/Bio/Alphabet/__init__.pys   RNAAlphabet/ s   s   SecondaryStructurec      s   8 9 d Z  RS(   Ns   HSTC(   s   letters(    (    (    s.   /mit/seven/lib/python/Bio/Alphabet/__init__.pys   SecondaryStructure8 s   s   ThreeLetterProteinc      s_   ; < d Z  = d d d d d d d d	 d
 d d d d d d d d d d d d d d d g Z RS(   Ni   s   Alas   Asxs   Cyss   Asps   Glus   Phes   Glys   Hiss   Iles   Lyss   Leus   Mets   Asns   Pros   Glns   Args   Sers   Thrs   Secs   Vals   Trps   Xaas   Tyrs   Glx(   s   sizes   letters(    (    (    s.   /mit/seven/lib/python/Bio/Alphabet/__init__.pys   ThreeLetterProtein; s   	s   AlphabetEncoderc      s)   G H d   Z  N d   Z Q d   Z RS(   Nc    sI   H I | |  _  J | i t j	 o K | i | |  _ n M t |  _ d  S(   N(   s   alphabets   selfs   letterss   Nones   new_letters(   s   selfs   alphabets   new_letters(    (    s.   /mit/seven/lib/python/Bio/Alphabet/__init__.pys   __init__H s   c    s   N O t  |  i |  Sd  S(   N(   s   getattrs   selfs   alphabets   key(   s   selfs   key(    (    s.   /mit/seven/lib/python/Bio/Alphabet/__init__.pys   __getattr__N s   c    s   Q R d Sd  S(   Ni    (    (   s   selfs   other(    (    s.   /mit/seven/lib/python/Bio/Alphabet/__init__.pys   containsQ s   (   s   __init__s   __getattr__s   contains(    (    (    s.   /mit/seven/lib/python/Bio/Alphabet/__init__.pys   AlphabetEncoderG s   s   Gappedc      s)   T U d Z  V e  d  Z Y d   Z RS(   Ns   -c    s   V W t  i |  | |  d  S(   N(   s   AlphabetEncoders   __init__s   selfs   alphabets   gap_char(   s   selfs   alphabets   gap_char(    (    s.   /mit/seven/lib/python/Bio/Alphabet/__init__.pys   __init__V s   c    s0   Y Z | i |  i j o |  i i | i  Sd  S(   N(   s   others   gap_chars   selfs   alphabets   contains(   s   selfs   other(    (    s.   /mit/seven/lib/python/Bio/Alphabet/__init__.pys   containsY s   (   s   gap_chars   __init__s   contains(    (    (    s.   /mit/seven/lib/python/Bio/Alphabet/__init__.pys   GappedT s   	s   HasStopCodonc      s5   ] ^ d Z  _ e  d  Z a d   Z g d   Z RS(   Ns   *c    s   _ ` t  i |  | |  d  S(   N(   s   AlphabetEncoders   __init__s   selfs   alphabets   stop_symbol(   s   selfs   alphabets   stop_symbol(    (    s.   /mit/seven/lib/python/Bio/Alphabet/__init__.pys   __init___ s   c    sP   a b t  |  i | i  } c | d j o d t  |  i | i  Sn e | Sd  S(   Ni    (   s   cmps   selfs   alphabets   others   xs   stop_symbol(   s   selfs   others   x(    (    s.   /mit/seven/lib/python/Bio/Alphabet/__init__.pys   __cmp__a s   c    s0   g h | i |  i j o |  i i | i  Sd  S(   N(   s   others   stop_symbols   selfs   alphabets   contains(   s   selfs   other(    (    s.   /mit/seven/lib/python/Bio/Alphabet/__init__.pys   containsg s   (   s   stop_symbols   __init__s   __cmp__s   contains(    (    (    s.   /mit/seven/lib/python/Bio/Alphabet/__init__.pys   HasStopCodon] s   	(   s   strings   res   __all__s   Alphabets   generic_alphabets   SingleLetterAlphabets   ProteinAlphabets   generic_proteins   NucleotideAlphabets   generic_nucleotides   DNAAlphabets   generic_dnas   RNAAlphabets   generic_rnas   SecondaryStructures   ThreeLetterProteins   AlphabetEncoders   Gappeds   HasStopCodon(   s   generic_alphabets   SingleLetterAlphabets   AlphabetEncoders   ThreeLetterProteins   RNAAlphabets   generic_nucleotides   HasStopCodons   DNAAlphabets   res   generic_rnas   SecondaryStructures   Alphabets   generic_proteins   ProteinAlphabets   __all__s   strings   Gappeds   generic_dnas   NucleotideAlphabet(    (    s.   /mit/seven/lib/python/Bio/Alphabet/__init__.pys   ? s"   
	