*ë
^ýi:c       sˆ    
 d  k  l Z l Z  d f  d „  ƒ  YZ  d f  d „  ƒ  YZ " d e f d „  ƒ  YZ ' d f  d „  ƒ  YZ 3 d	 f  d
 „  ƒ  YZ : d f  d „  ƒ  YZ A d f  d „  ƒ  YZ	 I d f  d „  ƒ  YZ
 Q d f  d „  ƒ  YZ X d f  d „  ƒ  YZ _ d f  d „  ƒ  YZ f d f  d „  ƒ  YZ m d f  d „  ƒ  YZ t d e f d „  ƒ  YZ © d e f d „  ƒ  YZ .d „  Z 2d  „  Z d! S("   (   s   GenericScanners   GenericParsers   Tokenc      s)     d „  Z   d „  Z  d „  Z RS(   Nc    s     | |  _  d  S(   N(   s   types   self(   s   selfs   type(    (    s3   /mit/seven/lib/python/Bio/GenBank/LocationParser.pys   __init__ s   c    s     t  |  i | ƒ Sd  S(   N(   s   cmps   selfs   types   other(   s   selfs   other(    (    s3   /mit/seven/lib/python/Bio/GenBank/LocationParser.pys   __cmp__ s   c    s     d |  i f Sd  S(   Ns
   Tokens(%r)(   s   selfs   type(   s   self(    (    s3   /mit/seven/lib/python/Bio/GenBank/LocationParser.pys   __repr__ s   (   s   __init__s   __cmp__s   __repr__(    (    (    s3   /mit/seven/lib/python/Bio/GenBank/LocationParser.pys   Token s   s   Integerc      s>     d Z   d „  Z  d „  Z  d „  Z  d „  Z RS(   Ns   integerc    s     | |  _  d  S(   N(   s   vals   self(   s   selfs   val(    (    s3   /mit/seven/lib/python/Bio/GenBank/LocationParser.pys   __init__ s   c    s     t  |  i | ƒ Sd  S(   N(   s   cmps   selfs   types   other(   s   selfs   other(    (    s3   /mit/seven/lib/python/Bio/GenBank/LocationParser.pys   __cmp__ s   c    s     t  |  i ƒ Sd  S(   N(   s   strs   selfs   val(   s   self(    (    s3   /mit/seven/lib/python/Bio/GenBank/LocationParser.pys   __str__ s   c    s     d |  i Sd  S(   Ns   Integer(%s)(   s   selfs   val(   s   self(    (    s3   /mit/seven/lib/python/Bio/GenBank/LocationParser.pys   __repr__ s   (   s   types   __init__s   __cmp__s   __str__s   __repr__(    (    (    s3   /mit/seven/lib/python/Bio/GenBank/LocationParser.pys   Integer s
   	s   UnsignedIntegerc      s   " # d Z  $ d „  Z RS(   Ns   unsigned_integerc    s   $ % d |  i Sd  S(   Ns   UnsignedInteger(%s)(   s   selfs   val(   s   self(    (    s3   /mit/seven/lib/python/Bio/GenBank/LocationParser.pys   __repr__$ s   (   s   types   __repr__(    (    (    s3   /mit/seven/lib/python/Bio/GenBank/LocationParser.pys   UnsignedInteger" s   	s   Symbolc      s>   ' ( d Z  ) d „  Z + d „  Z - d „  Z / d „  Z RS(   Ns   symbolc    s   ) * | |  _  d  S(   N(   s   names   self(   s   selfs   name(    (    s3   /mit/seven/lib/python/Bio/GenBank/LocationParser.pys   __init__) s   c    s   + , t  |  i | ƒ Sd  S(   N(   s   cmps   selfs   types   other(   s   selfs   other(    (    s3   /mit/seven/lib/python/Bio/GenBank/LocationParser.pys   __cmp__+ s   c    s   - . t  |  i ƒ Sd  S(   N(   s   strs   selfs   name(   s   self(    (    s3   /mit/seven/lib/python/Bio/GenBank/LocationParser.pys   __str__- s   c    s   / 0 d t  |  i ƒ Sd  S(   Ns
   Symbol(%s)(   s   reprs   selfs   name(   s   self(    (    s3   /mit/seven/lib/python/Bio/GenBank/LocationParser.pys   __repr__/ s   (   s   types   __init__s   __cmp__s   __str__s   __repr__(    (    (    s3   /mit/seven/lib/python/Bio/GenBank/LocationParser.pys   Symbol' s
   	s   LowBoundc      s   3 4 d „  Z  6 d „  Z RS(   Nc    s   4 5 | |  _  d  S(   N(   s   bases   self(   s   selfs   base(    (    s3   /mit/seven/lib/python/Bio/GenBank/LocationParser.pys   __init__4 s   c    s   6 7 d |  i Sd  S(   Ns   LowBound(%r)(   s   selfs   base(   s   self(    (    s3   /mit/seven/lib/python/Bio/GenBank/LocationParser.pys   __repr__6 s   (   s   __init__s   __repr__(    (    (    s3   /mit/seven/lib/python/Bio/GenBank/LocationParser.pys   LowBound3 s   s	   HighBoundc      s   : ; d „  Z  = d „  Z RS(   Nc    s   ; < | |  _  d  S(   N(   s   bases   self(   s   selfs   base(    (    s3   /mit/seven/lib/python/Bio/GenBank/LocationParser.pys   __init__; s   c    s   = > d |  i Sd  S(   Ns   HighBound(%r)(   s   selfs   base(   s   self(    (    s3   /mit/seven/lib/python/Bio/GenBank/LocationParser.pys   __repr__= s   (   s   __init__s   __repr__(    (    (    s3   /mit/seven/lib/python/Bio/GenBank/LocationParser.pys	   HighBound: s   s   TwoBoundc      s   A B d „  Z  E d „  Z RS(   Nc    s   B C | |  _  D | |  _ d  S(   N(   s   lows   selfs   high(   s   selfs   lows   high(    (    s3   /mit/seven/lib/python/Bio/GenBank/LocationParser.pys   __init__B s   c    s   E F d |  i |  i f Sd  S(   Ns   TwoBound(%r, %r)(   s   selfs   lows   high(   s   self(    (    s3   /mit/seven/lib/python/Bio/GenBank/LocationParser.pys   __repr__E s   (   s   __init__s   __repr__(    (    (    s3   /mit/seven/lib/python/Bio/GenBank/LocationParser.pys   TwoBoundA s   s   Betweenc      s   I J d „  Z  M d „  Z RS(   Nc    s   J K | |  _  L | |  _ d  S(   N(   s   lows   selfs   high(   s   selfs   lows   high(    (    s3   /mit/seven/lib/python/Bio/GenBank/LocationParser.pys   __init__J s   c    s   M N d |  i |  i f Sd  S(   Ns   Between(%r, %r)(   s   selfs   lows   high(   s   self(    (    s3   /mit/seven/lib/python/Bio/GenBank/LocationParser.pys   __repr__M s   (   s   __init__s   __repr__(    (    (    s3   /mit/seven/lib/python/Bio/GenBank/LocationParser.pys   BetweenI s   s   Rangec      s   Q R d „  Z  U d „  Z RS(   Nc    s   R S | |  _  T | |  _ d  S(   N(   s   lows   selfs   high(   s   selfs   lows   high(    (    s3   /mit/seven/lib/python/Bio/GenBank/LocationParser.pys   __init__R s   c    s   U V d |  i |  i f Sd  S(   Ns   Range(%r, %r)(   s   selfs   lows   high(   s   self(    (    s3   /mit/seven/lib/python/Bio/GenBank/LocationParser.pys   __repr__U s   (   s   __init__s   __repr__(    (    (    s3   /mit/seven/lib/python/Bio/GenBank/LocationParser.pys   RangeQ s   s   Functionc      s   X Y d „  Z  \ d „  Z RS(   Nc    s   Y Z | |  _  [ | |  _ d  S(   N(   s   names   selfs   args(   s   selfs   names   args(    (    s3   /mit/seven/lib/python/Bio/GenBank/LocationParser.pys   __init__Y s   c    s   \ ] d |  i |  i f Sd  S(   Ns   Function(%r, %r)(   s   selfs   names   args(   s   self(    (    s3   /mit/seven/lib/python/Bio/GenBank/LocationParser.pys   __repr__\ s   (   s   __init__s   __repr__(    (    (    s3   /mit/seven/lib/python/Bio/GenBank/LocationParser.pys   FunctionX s   s   AbsoluteLocationc      s   _ ` d „  Z  c d „  Z RS(   Nc    s   ` a | |  _  b | |  _ d  S(   N(   s   paths   selfs   local_location(   s   selfs   paths   local_location(    (    s3   /mit/seven/lib/python/Bio/GenBank/LocationParser.pys   __init__` s   c    s   c d d |  i |  i f Sd  S(   Ns   AbsoluteLocation(%r, %r)(   s   selfs   paths   local_location(   s   self(    (    s3   /mit/seven/lib/python/Bio/GenBank/LocationParser.pys   __repr__c s   (   s   __init__s   __repr__(    (    (    s3   /mit/seven/lib/python/Bio/GenBank/LocationParser.pys   AbsoluteLocation_ s   s   Pathc      s   f g d „  Z  j d „  Z RS(   Nc    s   g h | |  _  i | |  _ d  S(   N(   s   databases   selfs	   accession(   s   selfs   databases	   accession(    (    s3   /mit/seven/lib/python/Bio/GenBank/LocationParser.pys   __init__g s   c    s   j k d |  i |  i f Sd  S(   Ns   Path(%r, %r)(   s   selfs   databases	   accession(   s   self(    (    s3   /mit/seven/lib/python/Bio/GenBank/LocationParser.pys   __repr__j s   (   s   __init__s   __repr__(    (    (    s3   /mit/seven/lib/python/Bio/GenBank/LocationParser.pys   Pathf s   s   FeatureNamec      s   m n d „  Z  q d „  Z RS(   Nc    s   n o | |  _  p | |  _ d  S(   N(   s   paths   selfs   label(   s   selfs   paths   label(    (    s3   /mit/seven/lib/python/Bio/GenBank/LocationParser.pys   __init__n s   c    s   q r d |  i |  i f Sd  S(   Ns   FeatureName(%r, %r)(   s   selfs   paths   label(   s   self(    (    s3   /mit/seven/lib/python/Bio/GenBank/LocationParser.pys   __repr__q s   (   s   __init__s   __repr__(    (    (    s3   /mit/seven/lib/python/Bio/GenBank/LocationParser.pys   FeatureNamem s   s   LocationScannerc      s¹   t u d „  Z  x d „  Z } d „  Z € d „  Z ƒ d „  Z † d „  Z ‰ d „  Z Œ d „  Z  d	 „  Z ’ d
 „  Z	 • d „  Z
 ˜ d „  Z › d „  Z Ÿ d „  Z ¢ d „  Z RS(   Nc    s   u v t  i |  ƒ d  S(   N(   s   GenericScanners   __init__s   self(   s   self(    (    s3   /mit/seven/lib/python/Bio/GenBank/LocationParser.pys   __init__u s   c    s0   x y g  |  _ z t i |  | ƒ { |  i Sd  S(   N(   s   selfs   rvs   GenericScanners   tokenizes   input(   s   selfs   input(    (    s3   /mit/seven/lib/python/Bio/GenBank/LocationParser.pys   tokenizex s   c    s#   } ~  |  i i t d ƒ ƒ d S(   s    :: s   double_colonN(   s   selfs   rvs   appends   Token(   s   selfs   input(    (    s3   /mit/seven/lib/python/Bio/GenBank/LocationParser.pys   t_double_colon} s   c    s#   €  ‚ |  i i t d ƒ ƒ d S(   s    \.\. s
   double_dotN(   s   selfs   rvs   appends   Token(   s   selfs   input(    (    s3   /mit/seven/lib/python/Bio/GenBank/LocationParser.pys   t_double_dot€ s   c    s#   ƒ „ … |  i i t d ƒ ƒ d S(   s
    \.(?!\.) s   dotN(   s   selfs   rvs   appends   Token(   s   selfs   input(    (    s3   /mit/seven/lib/python/Bio/GenBank/LocationParser.pys   t_dotƒ s   c    s#   † ‡ ˆ |  i i t d ƒ ƒ d S(   s    \^ s   caretN(   s   selfs   rvs   appends   Token(   s   selfs   input(    (    s3   /mit/seven/lib/python/Bio/GenBank/LocationParser.pys   t_caret† s   c    s#   ‰ Š ‹ |  i i t d ƒ ƒ d S(   s    \, s   commaN(   s   selfs   rvs   appends   Token(   s   selfs   input(    (    s3   /mit/seven/lib/python/Bio/GenBank/LocationParser.pys   t_comma‰ s   c    s)   Œ  Ž |  i i t t | ƒ ƒ ƒ d S(   s
    -?[0-9]+ N(   s   selfs   rvs   appends   Integers   ints   input(   s   selfs   input(    (    s3   /mit/seven/lib/python/Bio/GenBank/LocationParser.pys	   t_integerŒ s   c    s)     ‘ |  i i t t | ƒ ƒ ƒ d S(   s    [0-9]+ N(   s   selfs   rvs   appends   UnsignedIntegers   ints   input(   s   selfs   input(    (    s3   /mit/seven/lib/python/Bio/GenBank/LocationParser.pys   t_unsigned_integer s   c    s#   ’ “ ” |  i i t d ƒ ƒ d S(   s    :(?!:) s   colonN(   s   selfs   rvs   appends   Token(   s   selfs   input(    (    s3   /mit/seven/lib/python/Bio/GenBank/LocationParser.pys   t_colon’ s   c    s#   • – — |  i i t d ƒ ƒ d S(   s    \( s
   open_parenN(   s   selfs   rvs   appends   Token(   s   selfs   input(    (    s3   /mit/seven/lib/python/Bio/GenBank/LocationParser.pys   t_open_paren• s   c    s#   ˜ ™ š |  i i t d ƒ ƒ d S(   s    \) s   close_parenN(   s   selfs   rvs   appends   Token(   s   selfs   input(    (    s3   /mit/seven/lib/python/Bio/GenBank/LocationParser.pys   t_close_paren˜ s   c    s#   › œ ž |  i i t | ƒ ƒ d S(   s"    [A-Za-z0-9_'*-][A-Za-z0-9_'*.-]* N(   s   selfs   rvs   appends   Symbols   input(   s   selfs   input(    (    s3   /mit/seven/lib/python/Bio/GenBank/LocationParser.pys   t_symbol› s   c    s#   Ÿ   ¡ |  i i t d ƒ ƒ d S(   s    < s	   less_thanN(   s   selfs   rvs   appends   Token(   s   selfs   input(    (    s3   /mit/seven/lib/python/Bio/GenBank/LocationParser.pys   t_less_thanŸ s   c    s#   ¢ £ ¤ |  i i t d ƒ ƒ d S(   s    > s   greater_thanN(   s   selfs   rvs   appends   Token(   s   selfs   input(    (    s3   /mit/seven/lib/python/Bio/GenBank/LocationParser.pys   t_greater_than¢ s   (   s   __init__s   tokenizes   t_double_colons   t_double_dots   t_dots   t_carets   t_commas	   t_integers   t_unsigned_integers   t_colons   t_open_parens   t_close_parens   t_symbols   t_less_thans   t_greater_than(    (    (    s3   /mit/seven/lib/python/Bio/GenBank/LocationParser.pys   LocationScannert s   s   LocationParserc      sì   © ª d d „ Z  ® d „  Z ¶ d „  Z ¼ d „  Z Å d „  Z Î d „  Z × d „  Z Ý d	 „  Z ä d
 „  Z í d „  Z	 ó d „  Z
 ü d „  Z d „  Z d „  Z d „  Z d „  Z d „  Z "d „  Z (d „  Z RS(   Ns   locationc    s&   ª « t  i |  | ƒ ¬ d |  _ d  S(   Ni    (   s   GenericParsers   __init__s   selfs   starts	   begin_pos(   s   selfs   start(    (    s3   /mit/seven/lib/python/Bio/GenBank/LocationParser.pys   __init__ª s   c    s   ® ³ ´ | d Sd S(   sp   
        location ::= absolute_location
        location ::= feature_name
        location ::= function
        i    N(   s   args(   s   selfs   args(    (    s3   /mit/seven/lib/python/Bio/GenBank/LocationParser.pys
   p_location® s   c    s%   ¶ ¹ º t  | d i | d ƒ Sd S(   sW   
        function ::= functional_operator open_paren location_list close_paren
        i    i   N(   s   Functions   argss   name(   s   selfs   args(    (    s3   /mit/seven/lib/python/Bio/GenBank/LocationParser.pys
   p_function¶ s   c    sR   ¼ À Á t  | ƒ d j o Â t t | d ƒ Sn Ã t | d | d ƒ Sd S(   sn   
        absolute_location ::= local_location
        absolute_location ::= path colon local_location
        i   i    N(   s   lens   argss   AbsoluteLocations   None(   s   selfs   args(    (    s3   /mit/seven/lib/python/Bio/GenBank/LocationParser.pys   p_absolute_location¼ s   c    sP   Å É Ê t  | ƒ d j o Ë t | d | d ƒ Sn Ì t t | d ƒ Sd S(   se   
        path ::= database double_colon primary_accession
        path ::= primary_accession
        i   i    i   N(   s   lens   argss   Paths   None(   s   selfs   args(    (    s3   /mit/seven/lib/python/Bio/GenBank/LocationParser.pys   p_pathÅ s   c    sP   Î Ò Ó t  | ƒ d j o Ô t | d | d ƒ Sn Õ t t | d ƒ Sd S(   sb   
        feature_name ::= path colon feature_label
        feature_name ::= feature_label
        i   i    i   N(   s   lens   argss   FeatureNames   None(   s   selfs   args(    (    s3   /mit/seven/lib/python/Bio/GenBank/LocationParser.pys   p_feature_nameÎ s   c    s   × Ú Û | d i Sd S(   s"   
        label ::= symbol
        i    N(   s   argss   name(   s   selfs   args(    (    s3   /mit/seven/lib/python/Bio/GenBank/LocationParser.pys   p_feature_label× s   c    s   Ý â ã | d Sd S(   s„   
        local_location ::= base_position
        local_location ::= between_position
        local_location ::= base_range
        i    N(   s   args(   s   selfs   args(    (    s3   /mit/seven/lib/python/Bio/GenBank/LocationParser.pys   p_local_locationÝ s   c    sA   ä è é t  | ƒ d j o ê | Sn ë | d | d g Sd S(   sc   
        location_list ::= location
        location_list ::= location_list comma location
        i   i    i   N(   s   lens   args(   s   selfs   args(    (    s3   /mit/seven/lib/python/Bio/GenBank/LocationParser.pys   p_location_listä s   c    s   í ð ñ | d Sd S(   s0   
        functional_operator ::= symbol
        i    N(   s   args(   s   selfs   args(    (    s3   /mit/seven/lib/python/Bio/GenBank/LocationParser.pys   p_functional_operatorí s   c    s   ó ù ú | d Sd S(   s§   
        base_position ::= integer
        base_position ::= low_base_bound
        base_position ::= high_base_bound
        base_position ::= two_base_bound
        i    N(   s   args(   s   selfs   args(    (    s3   /mit/seven/lib/python/Bio/GenBank/LocationParser.pys   p_base_positionó s   c    s   ü ÿ  t  | d ƒ Sd S(   s9   
        low_base_bound ::= greater_than integer
        i   N(   s   LowBounds   args(   s   selfs   args(    (    s3   /mit/seven/lib/python/Bio/GenBank/LocationParser.pys   p_low_base_boundü s   c    s   t  | d ƒ Sd S(   s7   
        high_base_bound ::= less_than integer
        i   N(   s	   HighBounds   args(   s   selfs   args(    (    s3   /mit/seven/lib/python/Bio/GenBank/LocationParser.pys   p_high_base_bounds   c    s"   t  | d | d ƒ Sd S(   s[   
        two_base_bound ::= open_paren base_position dot base_position close_paren
        i   i   N(   s   TwoBounds   args(   s   selfs   args(    (    s3   /mit/seven/lib/python/Bio/GenBank/LocationParser.pys   p_two_base_bound_1s   c    s"   t  | d | d ƒ Sd S(   sD   
        two_base_bound ::= base_position dot base_position
        i    i   N(   s   TwoBounds   args(   s   selfs   args(    (    s3   /mit/seven/lib/python/Bio/GenBank/LocationParser.pys   p_two_base_bound_2s   c    s"   t  | d | d ƒ Sd S(   sH   
        between_position ::= base_position caret base_position
        i    i   N(   s   Betweens   args(   s   selfs   args(    (    s3   /mit/seven/lib/python/Bio/GenBank/LocationParser.pys   p_between_positions   c    s"    t  | d | d ƒ Sd S(   sG   
        base_range ::= base_position double_dot base_position
        i    i   N(   s   Ranges   args(   s   selfs   args(    (    s3   /mit/seven/lib/python/Bio/GenBank/LocationParser.pys   p_base_ranges   c    s   "%&| d i Sd S(   s%   
        database ::= symbol
        i    N(   s   argss   name(   s   selfs   args(    (    s3   /mit/seven/lib/python/Bio/GenBank/LocationParser.pys
   p_database"s   c    s   (+,| d i Sd S(   s.   
        primary_accession ::= symbol
        i    N(   s   argss   name(   s   selfs   args(    (    s3   /mit/seven/lib/python/Bio/GenBank/LocationParser.pys   p_primary_accession(s   (   s   __init__s
   p_locations
   p_functions   p_absolute_locations   p_paths   p_feature_names   p_feature_labels   p_local_locations   p_location_lists   p_functional_operators   p_base_positions   p_low_base_bounds   p_high_base_bounds   p_two_base_bound_1s   p_two_base_bound_2s   p_between_positions   p_base_ranges
   p_databases   p_primary_accession(    (    (    s3   /mit/seven/lib/python/Bio/GenBank/LocationParser.pys   LocationParser© s&   					c    s#   ./t  ƒ  } 0| i |  ƒ Sd  S(   N(   s   LocationScanners   scanners   tokenizes   input(   s   inputs   scanner(    (    s3   /mit/seven/lib/python/Bio/GenBank/LocationParser.pys   scan.s   c    s#   24t  ƒ  } 5| i |  ƒ Sd  S(   N(   s   LocationParsers   parsers   parses   tokens(   s   tokenss   parser(    (    s3   /mit/seven/lib/python/Bio/GenBank/LocationParser.pys   parse2s   N(   s   Bio.Tools.Parsers.sparks   GenericScanners   GenericParsers   Tokens   Integers   UnsignedIntegers   Symbols   LowBounds	   HighBounds   TwoBounds   Betweens   Ranges   Functions   AbsoluteLocations   Paths   FeatureNames   LocationScanners   LocationParsers   scans   parse(   s   LowBounds	   HighBounds   GenericParsers   Tokens   Integers   LocationScanners   UnsignedIntegers   TwoBounds   FeatureNames   Ranges   parses   Paths   Betweens   Symbols   LocationParsers   scans   AbsoluteLocations   GenericScanners   Function(    (    s3   /mit/seven/lib/python/Bio/GenBank/LocationParser.pys   ?
 s"   	5…