* ;;csdZdgZdkTdklZdkTdfdYZdfdYZdefd YZ d fd YZ Ad e fd YZ dS(sPMedline This module provides code to work with Medline. Classes: Record Holds Medline data. Iterator Iterates over a file containing Medline records. RecordParser Parses a Medline record into a Record object. _Scanner Scans a Medline record. _RecordConsumer Consumes Medline data to a Record object. sPubMed(s*(sFilesRecordcsdZWXdZRS(sP Holds information from a Medline record. Members: id Medline ID. pubmed_id Pubmed ID. mesh_headings List of MeSH headings. mesh_tree_numbers List of MeSH Tree Numbers. mesh_subheadings List of MeSH subheadings. abstract The abstract. comments List of references to comments. abstract_author The author of the abstract. english_abstract "A" if a foreign article has an english abstract. source Bibliographic information. publication_types List of type of publication. number_of_references Number of bibliographic references, for REVIEW pubs. authors List of authors. no_author "A" for anonymous. address Address of the first author. journal_title_code Three-character code assigned to the journal. title_abbreviation Abbreviation of journal title. issn International Standard Serial Number. journal_subsets List of strings that describe journal groupings. country Country of publication languages List of languages of the article. title Article title. transliterated_title Title in the original language. call_number The call number of the journal issue. issue_part_supplement Issue, part, or supplement of journal published. volume_issue Volume number of journal. publication_date Date published (string). year Year published (string). pagination Inclusive pages of an indexed item. special_list Coding for the database of the citation. substance_name Preferred name for a chemical or drug. gene_symbols List of abbreviated gene names. secondary_source_ids List of source databanks and accessions. identifications List of research grant or contract numbers. registry_numbers List of CAS or EC numbers. personal_name_as_subjects List of individuals who are subjects. record_originators List of people who worked on record. entry_date Date record made machine readable (YYMMDD). entry_month YYMM entered into Medline. class_update_date Date touched by Class Maintenance action (string). last_revision_date Date for minor revision. major_revision_date Date for major revision. undefined List of lines that don't match the standard. cs XYd|_Zd|_\g|_]g|_^g|_`d|_ag|_bd|_cd|_ ed|_ fg|_ gd|_ ig|_ jd|_kd|_md|_nd|_od|_pg|_qd|_rg|_td|_ud|_vd|_wd|_xd|_yd|_zd|_{d|_}d|_d|_g|_ g|_!g|_"g|_#g|_$g|_%d|_&d|_'d|_(d|_)d|_*g|_+dS(Ns(,sselfsids pubmed_ids mesh_headingssmesh_tree_numberssmesh_subheadingssabstractscommentssabstract_authorsenglish_abstractssourcespublication_typessnumber_of_referencessauthorss no_authorsaddresssjournal_title_codestitle_abbreviationsissnsjournal_subsetsscountrys languagesstitlestransliterated_titles call_numbersissue_part_supplements volume_issuespublication_datesyears paginations special_listssubstance_names gene_symbolsssecondary_source_idssidentificationssregistry_numbersspersonal_name_as_subjectssrecord_originatorss entry_dates entry_monthsclass_update_dateslast_revision_datesmajor_revision_dates undefined(sself((s-/mit/seven/lib/python/Bio/Medline/__init__.pys__init__XsV                                          (s__doc__s__init__(((s-/mit/seven/lib/python/Bio/Medline/__init__.pysRecords ;sIteratorcs)dZedZdZRS(sReturns one record at a time from a file of Medline records. Methods: next Return the next record from the stream, or None. csdt|tj ot|tj otdnti||_||_ dS(s__init__(self, handle, parser=None) Create a new iterator. handle is a file-like object. parser is an optional Parser object to change the results into another form. If set to None, then the raw contents of the file will be returned. s,I expected a file handle or file-like objectN( stypeshandlesFileTypes InstanceTypes ValueErrorsFiles UndoHandlesselfs_uhandlesparsers_parser(sselfshandlesparser((s-/mit/seven/lib/python/Bio/Medline/__init__.pys__init__s )csXg}xedoZ|ii}| oPn|i|ti|djoPnqWxxdom|ii}| oPnti|djo|ii|Pn|i|qW| o t Snti |d}|i t j o|i i |Sn|SdS(snext(self) -> object Return the next medline record from the file. If no more records, return None. isN(slinessselfs_uhandlesreadlineslinesappendsstringsrstripssavelinesNonesjoinsdatas_parsers parse_str(sselfsdataslinessline((s-/mit/seven/lib/python/Bio/Medline/__init__.pysnexts2        (s__doc__sNones__init__snext(((s-/mit/seven/lib/python/Bio/Medline/__init__.pysIterators  s RecordParsercs&dZdZdZRS(s/Parses Medline data into a Record object. cs%t|_t|_dS(N(s_Scannersselfs_scanners_RecordConsumers _consumer(sself((s-/mit/seven/lib/python/Bio/Medline/__init__.pys__init__scs-|ii||i|iiSdS(N(sselfs_scannersfeedshandles _consumersdata(sselfshandle((s-/mit/seven/lib/python/Bio/Medline/__init__.pysparses(s__doc__s__init__sparse(((s-/mit/seven/lib/python/Bio/Medline/__init__.pys RecordParsers  s_ScannercsdZhdd<dd<dd<dd<d d <d d <d d<dd<dd<dd<dd<dd<dd<dd<dd<dd <d!d"<d#d$<d%d&<d'd(<d)d*<d+d,<d-d.<d/d0<d1d2<d3d4<d5d6<d7d8<d9d:<d;d<<d=d><d?d@<dAdB<dCdD<dEdF<dGdH<dIdJ<dKdL<dMdN<dOdP<dQdR<dSdT