*λ
χξ:c       s`      d  k  Z   d  k Z d  k Z  d  k Z  d f  d     YZ < d f  d     YZ d  S(   Ns   Seqc      s     e  i d  Z  d   Z  d   Z  d   Z   d   Z ! d   Z $ d   Z , d   Z	 6 d	   Z
 9 d
   Z RS(   Nc    sI    	 t  o  t |  t d  j p t   | |  _  | |  _ d  S(   Ns    (   s	   __debug__s   types   datas   AssertionErrors   selfs   alphabet(   s   selfs   datas   alphabet(    (    s    /mit/seven/lib/python/Bio/Seq.pys   __init__ s   *c    s3     d |  i i t |  i  t |  i  f Sd  S(   Ns
   %s(%s, %s)(   s   selfs	   __class__s   __name__s   reprs   datas   alphabet(   s   self(    (    s    /mit/seven/lib/python/Bio/Seq.pys   __repr__ s   c    ss     t  |  i  d j o  t |  i d  d  } n  t |  i  }  d |  i i | t |  i  f Sd  S(   Ni<   s    ...s
   %s(%s, %s)(   s   lens   selfs   datas   reprs   ss	   __class__s   __name__s   alphabet(   s   selfs   s(    (    s    /mit/seven/lib/python/Bio/Seq.pys   __str__ s   c    s     t  |  i  Sd  S(   N(   s   lens   selfs   data(   s   self(    (    s    /mit/seven/lib/python/Bio/Seq.pys   __len__ s    c    s       |  i | Sd  S(   N(   s   selfs   datas   i(   s   selfs   i(    (    s    /mit/seven/lib/python/Bio/Seq.pys   __getitem__  s    c    sE   ! " t  | d  } t  | d  } # t |  i | | !|  i  Sd  S(   Ni    (   s   maxs   is   js   Seqs   selfs   datas   alphabet(   s   selfs   is   j(    (    s    /mit/seven/lib/python/Bio/Seq.pys   __getslice__! s   !c    s¨   $ % |  i i | i  o$ & |  i |  i | i |  i  Sne ' | i i |  i  o$ ( |  i |  i | i | i  Sn( * t d t |  i  t | i  f  d  S(   Ns   incompatable alphabets(   s   selfs   alphabets   containss   others	   __class__s   datas	   TypeErrors   str(   s   selfs   other(    (    s    /mit/seven/lib/python/Bio/Seq.pys   __add__$ s
   $$c    s¨   , - |  i i | i  o$ . |  i | i |  i |  i  Sne / | i i |  i  o$ 0 |  i | i |  i | i  Sn( 2 t d t |  i  t | i  f  d  S(   Ns   incompatable alphabets(   s   selfs   alphabets   containss   others	   __class__s   datas	   TypeErrors   str(   s   selfs   other(    (    s    /mit/seven/lib/python/Bio/Seq.pys   __radd__, s
   $$c    s   6 7 |  i Sd  S(   N(   s   selfs   data(   s   self(    (    s    /mit/seven/lib/python/Bio/Seq.pys   tostring6 s   c    s   9 : t  |  i |  i  Sd  S(   N(   s
   MutableSeqs   selfs   datas   alphabet(   s   self(    (    s    /mit/seven/lib/python/Bio/Seq.pys	   tomutable9 s   (   s   Alphabets   generic_alphabets   __init__s   __repr__s   __str__s   __len__s   __getitem__s   __getslice__s   __add__s   __radd__s   tostrings	   tomutable(    (    (    s    /mit/seven/lib/python/Bio/Seq.pys   Seq s   
s
   MutableSeqc      s#  < = e  i d  Z C d   Z H d   Z O d   Z ^ d   Z _ d   Z ` d   Z a d   Z	 b d	   Z
 e d
   Z m d   Z p d   Z x d   Z  d   Z  d   Z  d d  Z  d   Z  d   Z  d   Z  d   Z   d   Z ¨ d   Z « d   Z RS(   Nc    sW   = > t  |  t  d  j o ? t i d |  |  _ n A | |  _ B | |  _ d  S(   Ns    s   c(   s   types   datas   arrays   selfs   alphabet(   s   selfs   datas   alphabet(    (    s    /mit/seven/lib/python/Bio/Seq.pys   __init__= s   c    s3   C D d |  i i t |  i  t |  i  f Sd  S(   Ns
   %s(%s, %s)(   s   selfs	   __class__s   __name__s   reprs   datas   alphabet(   s   self(    (    s    /mit/seven/lib/python/Bio/Seq.pys   __repr__C s   c    s   H I t  |  i  d j o* J t t i |  i d  d  d  } n L t t i |  i d   } M d |  i i | t |  i	  f Sd  S(   Ni<   s    s    ...s
   %s(%s, %s)(
   s   lens   selfs   datas   reprs   strings   joins   ss	   __class__s   __name__s   alphabet(   s   selfs   s(    (    s    /mit/seven/lib/python/Bio/Seq.pys   __str__H s   *c    s  O P t  | t  oM Q t |  i | i  } R | d j o S t |  i | i  Sn T | Sn³ U t |  t d  j o V t |  i i	   |  Snz W t  | t
  oS X t |  i | i  } Y | d j o  Z t |  i i	   | i  Sn [ | Sn ] t |  i |  Sd  S(   Ni    s    (   s
   isinstances   others
   MutableSeqs   cmps   selfs   alphabets   xs   datas   types   tostrings   Seq(   s   selfs   others   x(    (    s    /mit/seven/lib/python/Bio/Seq.pys   __cmp__O s    c    s   ^ ^ t  |  i  Sd  S(   N(   s   lens   selfs   data(   s   self(    (    s    /mit/seven/lib/python/Bio/Seq.pys   __len__^ s    c    s   _ _ |  i | Sd  S(   N(   s   selfs   datas   i(   s   selfs   i(    (    s    /mit/seven/lib/python/Bio/Seq.pys   __getitem___ s    c    s   ` ` | |  i | <d  S(   N(   s   items   selfs   datas   i(   s   selfs   is   item(    (    s    /mit/seven/lib/python/Bio/Seq.pys   __setitem__` s    c    s   a a |  i | =d  S(   N(   s   selfs   datas   i(   s   selfs   i(    (    s    /mit/seven/lib/python/Bio/Seq.pys   __delitem__a s    c    sH   b c t  | d  } t  | d  } d |  i |  i | | !|  i  Sd  S(   Ni    (   s   maxs   is   js   selfs	   __class__s   datas   alphabet(   s   selfs   is   j(    (    s    /mit/seven/lib/python/Bio/Seq.pys   __getslice__b s   !c    s­   e f t  | d  } t  | d  } g t | t  o h | i |  i | | +nY i t | t |  i   o j | |  i | | +n& l t	 i	 d t
 |   |  i | | +d  S(   Ni    s   c(   s   maxs   is   js
   isinstances   others
   MutableSeqs   datas   selfs   types   arrays   str(   s   selfs   is   js   other(    (    s    /mit/seven/lib/python/Bio/Seq.pys   __setslice__e s   !c    s8   m n t  | d  } t  | d  } o |  i | | 5d  S(   Ni    (   s   maxs   is   js   selfs   data(   s   selfs   is   j(    (    s    /mit/seven/lib/python/Bio/Seq.pys   __delslice__m s   !c    s¨   p q |  i i | i  o$ r |  i |  i | i |  i  Sne s | i i |  i  o$ t |  i |  i | i | i  Sn( v t d t |  i  t | i  f  d  S(   Ns   incompatable alphabets(   s   selfs   alphabets   containss   others	   __class__s   datas	   TypeErrors   str(   s   selfs   other(    (    s    /mit/seven/lib/python/Bio/Seq.pys   __add__p s
   $$c    s¨   x y |  i i | i  o$ z |  i | i |  i |  i  Sne { | i i |  i  o$ | |  i | i |  i | i  Sn( ~ t d t |  i  t | i  f  d  S(   Ns   incompatable alphabets(   s   selfs   alphabets   containss   others	   __class__s   datas	   TypeErrors   str(   s   selfs   other(    (    s    /mit/seven/lib/python/Bio/Seq.pys   __radd__x s
   $$c    s     |  i i |  d  S(   N(   s   selfs   datas   appends   c(   s   selfs   c(    (    s    /mit/seven/lib/python/Bio/Seq.pys   append s   c    s     |  i i | |  d  S(   N(   s   selfs   datas   inserts   is   c(   s   selfs   is   c(    (    s    /mit/seven/lib/python/Bio/Seq.pys   insert s   i   c    s+     |  i | }  |  i | = | Sd  S(   N(   s   selfs   datas   is   c(   s   selfs   is   c(    (    s    /mit/seven/lib/python/Bio/Seq.pys   pop s   c    sj     xQ t  t |  i   d  r5 }  |  i | | j o  |  i | = d  Sn q W t d  d  S(   Ni    s#   MutableSeq.remove(x): x not in list(   s   ranges   lens   selfs   datas   is   items
   ValueError(   s   selfs   items   i(    (    s    /mit/seven/lib/python/Bio/Seq.pys   remove s    	c    sT     d }  x7 |  i d  r' }  | | j o  | d } n q W | Sd  S(   Ni    i   (   s   counts   selfs   datas   cs   item(   s   selfs   items   cs   count(    (    s    /mit/seven/lib/python/Bio/Seq.pys   count s   	 	c    s]     xD t  t |  i   d  r( }  |  i | | j o  | Sn q W t d  d  S(   Ni    s"   MutableSeq.index(x): x not in list(   s   ranges   lens   selfs   datas   is   items
   ValueError(   s   selfs   items   i(    (    s    /mit/seven/lib/python/Bio/Seq.pys   index s
    	c    s     |  i i   d  S(   N(   s   selfs   datas   reverse(   s   self(    (    s    /mit/seven/lib/python/Bio/Seq.pys   reverse s   c    sy     ‘ t  | t  o3 ’ x) | i d ’ r } £ |  i i |  q% Wn- ₯ x& | d ₯ r } ¦ |  i i |  qU Wd  S(   Ni    (   s
   isinstances   others
   MutableSeqs   datas   cs   selfs   append(   s   selfs   others   c(    (    s    /mit/seven/lib/python/Bio/Seq.pys   extend  s    	 	c    s   ¨ © t  i |  i d  Sd  S(   Ns    (   s   strings   joins   selfs   data(   s   self(    (    s    /mit/seven/lib/python/Bio/Seq.pys   tostring¨ s   c    s)   « ¬ t  t i |  i d  |  i  Sd  S(   Ns    (   s   Seqs   strings   joins   selfs   datas   alphabet(   s   self(    (    s    /mit/seven/lib/python/Bio/Seq.pys   toseq« s   (   s   Alphabets   generic_alphabets   __init__s   __repr__s   __str__s   __cmp__s   __len__s   __getitem__s   __setitem__s   __delitem__s   __getslice__s   __setslice__s   __delslice__s   __add__s   __radd__s   appends   inserts   pops   removes   counts   indexs   reverses   extends   tostrings   toseq(    (    (    s    /mit/seven/lib/python/Bio/Seq.pys
   MutableSeq< s.   	(   s   UserLists   strings   arrays   Alphabets   Seqs
   MutableSeq(   s   arrays   Alphabets
   MutableSeqs   Seqs   strings   UserList(    (    s    /mit/seven/lib/python/Bio/Seq.pys   ? s   6