*ë Ú!:cs¼dZdkZdkZdklZdd„Z$dd„Z/dd„Z8ed ed d „Z Id ed d „Z Yeeedd„Z lhd d„Z dS(s»ExPASy.py This module provides code to access resources at ExPASy over the WWW. http://www.expasy.ch/ Functions: get_prodoc_entry Interface to the get-prodoc-entry CGI script. get_prosite_entry Interface to the get-prosite-entry CGI script. get_sprot_raw Interface to the get-sprot-raw.pl CGI script. sprot_search_ful Interface to the sprot-search-ful CGI script. sprot_search_de Interface to the sprot-search-de CGI script. _open N(sFiles-http://www.expasy.ch/cgi-bin/get-prodoc-entrycs! "td||fƒSdS(sŒget_prodoc_entry(id, cgi='http://www.expasy.ch/cgi-bin/get-prodoc-entry') -> handle Get a handle to a PRODOC entry at ExPASy. s%s?%sN(s_openscgisid(sidscgi((s'/mit/seven/lib/python/Bio/WWW/ExPASy.pysget_prodoc_entryss.http://www.expasy.ch/cgi-bin/get-prosite-entrycs!$+-td||fƒSdS(sget_prosite_entry(id, cgi='http://www.expasy.ch/cgi-bin/get-prosite-entry') -> handle Get a handle to a PROSITE entry at ExPASy. s%s?%sN(s_openscgisid(sidscgi((s'/mit/seven/lib/python/Bio/WWW/ExPASy.pysget_prosite_entry$ss-http://www.expasy.ch/cgi-bin/get-sprot-raw.plcs!/56td||fƒSdS(sget_sprot_raw(id, cgi='http://www.expasy.ch/cgi-bin/get-sprot-raw.pl') -> handle Get a handle to a raw SwissProt entry at ExPASy. s%s?%sN(s_openscgisid(sidscgi((s'/mit/seven/lib/python/Bio/WWW/ExPASy.pys get_sprot_raw/sis-http://www.expasy.ch/cgi-bin/sprot-search-fulcs}8?@h|d<}A|oBd|d handle Search SwissProt by full text. sSEARCHsonsmakeWildsSsTN(stexts variabless make_wilds swissprotstrembls_openscgi(stexts make_wilds swissprotstremblscgis variables((s'/mit/seven/lib/python/Bio/WWW/ExPASy.pyssprot_search_ful8s   s,http://www.expasy.ch/cgi-bin/sprot-search-decsbIQRh|d<}S|oTd|d handle Search SwissProt by name, description, gene name, species, or organelle. sSEARCHsonsSsTN(stexts variabless swissprotstrembls_openscgi(stexts swissprotstremblscgis variables((s'/mit/seven/lib/python/Bio/WWW/ExPASy.pyssprot_search_deIs  s:http://expasy.cbr.nrc.ca/cgi-bin/scanprosite/scanprosite?1cszYbch}d|oe||d handle Scan a sequence for a Prosite pattern. Either a sequence or a SwissProt/ trEMBL sequence can be passed. exclude_frequent specifies whether to exclude patterns with high probability. sSEQsIDsoksboxsgetiN(s variablessseqsidsexclude_frequents_openscgi(sseqsidsexclude_frequentscgis variables((s'/mit/seven/lib/python/Bio/WWW/ExPASy.pys scanprosite1Ys     csµltvti|ƒ}w|o@x|}y|ozd||f}n{ti|ƒ}n}ti||ƒ}€t i |ƒ}ƒ|i ƒ o„t d‚n†|SdS(sP_open(cgi, params={}, get=1) -> UndoHandle Open a handle to ExPASy. cgi is the URL for the cgi script to access. params is a dictionary with the options to pass to it. get is a boolean that describes whether a GET should be used. Does some simple error checking, and will raise an IOError if it encounters one. s%s?%ss no resultsN(surllibs urlencodesparamssoptionssgetscgisfullcgisurlopenshandlesFiles UndoHandlesuhandlespeeklinesIOError(scgisparamssgetsoptionssuhandleshandlesfullcgi((s'/mit/seven/lib/python/Bio/WWW/ExPASy.pys_openls   ( s__doc__stimesurllibsBiosFilesget_prodoc_entrysget_prosite_entrys get_sprot_rawsNonessprot_search_fulssprot_search_des scanprosite1s_open( sget_prodoc_entryssprot_search_dessprot_search_fulsFilesget_prosite_entrysurllibs get_sprot_raws scanprosite1stimes_open((s'/mit/seven/lib/python/Bio/WWW/ExPASy.pys?s