*λ ;csŽdZdkZdkZdkZdkZdfd„ƒYZWeiZ[dfd„ƒYZzdfd„ƒYZdS(s!Code for more fancy file handles. Classes: UndoHandle File object decorator with support for undo-like operations. StringHandle Wraps a file object around a string. SGMLHandle File object that automatically strips SGML tags from data. SGMLStripper Object that strips SGML. Ns UndoHandlecs~dZ d„Z$d„Z)d„Z0d d„Z<d„Z@d„ZHd„ZMd „ZQd „Z RS( sιA Python handle that adds functionality for saving lines. Saves lines in a LIFO fashion. Added methods: saveline Save a line to be returned next time. peekline Peek at the next line without consuming it. cs !||_"g|_dS(N(shandlesselfs_handles_saved(sselfshandle((s2/mit/seven/lib/python2.1/site-packages/Bio/File.pys__init__ s cs<$%|it|ii||ƒ}&g|_'|SdS(N(sselfs_savedsapplys_handles readlinessargsskeywdsslines(sselfsargsskeywdsslines((s2/mit/seven/lib/python2.1/site-packages/Bio/File.pys readlines$s" csO)*|io+|iidƒ}n-t|ii||ƒ}.|SdS(Ni( sselfs_savedspopslinesapplys_handlesreadlinesargsskeywds(sselfsargsskeywdssline((s2/mit/seven/lib/python2.1/site-packages/Bio/File.pysreadline)s icsά01d}2x―2|djo|io”3t|idƒ|jo74|t|idƒ}5||iidƒ}n=7||id| }8|id||id<9d}qW:||ii|ƒSdS(Nsi(ssavedssizesselfs_savedslenspops_handlesread(sselfssizessaved((s2/mit/seven/lib/python2.1/site-packages/Bio/File.pysread0s cs+<=|o>|g|i|_ndS(N(slinesselfs_saved(sselfsline((s2/mit/seven/lib/python2.1/site-packages/Bio/File.pyssaveline<s csQ@A|ioB|id}n#D|iiƒ}E|i|ƒF|SdS(Ni(sselfs_savedslines_handlesreadlinessaveline(sselfsline((s2/mit/seven/lib/python2.1/site-packages/Bio/File.pyspeekline@s  csHHItt|iƒ}Jtd„|dƒ}K|iiƒ|SdS(Ncs J||S(N(sxsy(sxsy((s2/mit/seven/lib/python2.1/site-packages/Bio/File.pysJsi( smapslensselfs_savedslengthssreducessums_handlestell(sselfssumslengths((s2/mit/seven/lib/python2.1/site-packages/Bio/File.pystellHscs)MNg|_Ot|ii|ƒdS(N(sselfs_savedsapplys_handlesseeksargs(sselfsargs((s2/mit/seven/lib/python2.1/site-packages/Bio/File.pysseekMs csQRt|i|ƒSdS(N(sgetattrsselfs_handlesattr(sselfsattr((s2/mit/seven/lib/python2.1/site-packages/Bio/File.pys __getattr__Qs( s__doc__s__init__s readlinessreadlinesreadssavelinespeeklinestellsseeks __getattr__(((s2/mit/seven/lib/python2.1/site-packages/Bio/File.pys UndoHandles        s SGMLHandlecsJ[dZ^_d„Zhd„Zld„Zpd„Zvd„ZRS(sDA Python handle that automatically strips SGML tags from data. cs%_de||_ftƒ|_dS(s_SGMLStripper(handle) handle is a file handle to SGML-formatted data. N(shandlesselfs_handles SGMLStrippers _stripper(sselfshandle((s2/mit/seven/lib/python2.1/site-packages/Bio/File.pys__init___s cs5hit|ii||ƒ}j|ii|ƒSdS(N( sapplysselfs_handlesreadsargsskeywdssdatas _strippersstrip(sselfsargsskeywdssdata((s2/mit/seven/lib/python2.1/site-packages/Bio/File.pysreadhscs5lmt|ii||ƒ}n|ii|ƒSdS(N( sapplysselfs_handlesreadlinesargsskeywdsslines _strippersstrip(sselfsargsskeywdssline((s2/mit/seven/lib/python2.1/site-packages/Bio/File.pysreadlinelscsgpqt|ii||ƒ}rx8tt|ƒƒdrr}s|i i t ƒ|| string Strip the SGML tags from str. sis s N(sstrs is_newlinesselfs_parsersdatasfeed(sselfsstrs is_newline((s2/mit/seven/lib/python2.1/site-packages/Bio/File.pysstrip…s    (ssgmllibs SGMLParsersMyParsers__init__sstrip(((s2/mit/seven/lib/python2.1/site-packages/Bio/File.pys SGMLStripperzs ( s__doc__sossstringsStringIOssgmllibs UndoHandles StringHandles SGMLHandles SGMLStripper(soss SGMLStrippers SGMLHandlesStringIOsstrings UndoHandlessgmllibs StringHandle((s2/mit/seven/lib/python2.1/site-packages/Bio/File.pys?s     A