*ë |4á:csßdZdkZeiZxFdo;yeiidƒWnej o  PnXq*W!dkZdkZ"ee_%dkZ&dkZ'y4(dk l Z )dk l Z *dk l Z Wn>+ej o/,dGH-dGH.d GH/eid ƒnX4ed „ZPd „Z]d e fd„ƒYZkde fd„ƒYZŠe dd‹ddŒddddŽdddhed<ed<’dhdd<“ddgƒdS( sDistutils based setup script for Martel. This uses Distutils (http://python.org/sigs/distutils-sig/) the standard python mechanism for installing packages. For the easiest installation just type the command: python setup.py install For more details about the options available from distutils, look at the 'Installing Python Modules' distutils documentation, available from: http://python.org/sigs/distutils-sig/doc/ Or, if all else fails, feel free to write to the biopython list at biopython@biopython.org and ask for help. Nis(ssetup(sinstall(sCommands@Martel installation requires distutils, avaiable with python 2.0sor better, or from:s4 http://python.org/sigs/distutils-sig/download.htmlicsV4EF|ƒ o>Gd|GHHdGHI|GHJdGHK|o L|GHnndS(sYCheck if a program is installed and print a warning message if not. This helps users at least know they are missing some installed stuff and where to get it when they install Martel. Arguments: o check_library -- a function to check whether or not the specified program and version is present, returns 1 if it is, 0 otherwise. o name -- the name of the library we are looking for o location -- a URL where the library can be downloaded o other_messages -- other random messages to print if the library is not present (ie. version information, etc...) s WARNING -- %s is not installed.sYou should install this from:s+because otherwise Martel will not be usefulN(s check_librarysnameslocationsother_messages(snames check_libraryslocationsother_messages((s6/mit/seven/lib/python2.1/site-packages/Martel/setup.pys check_install4s  cs~PQyRdkl}SdSWnTtj o UnXVyWdk}XdSWnYtj o ZnX[dSdS(N(s TextToolsii(smxs TextToolss ImportError(s TextTools((s6/mit/seven/lib/python2.1/site-packages/Martel/setup.pyscheck_mxTextToolsPs   s my_installcs]dZbcd„ZRS(sŠOverride the standard install to check for dependencies. This will just run the normal install, and then print warning messages if packages are missing. cs-ceti|ƒhtdtidƒdS(Ns mxTextToolss5http://www.lemburg.com/files/python/mxExtensions.html(sinstallsrunsselfs check_installscheck_mxTextTools(sself((s6/mit/seven/lib/python2.1/site-packages/Martel/setup.pysruncs (s__doc__srun(((s6/mit/seven/lib/python2.1/site-packages/Martel/setup.pys my_install]s s run_testscsDkdZtudZwgZyd„Z|d„Zd„ZRS(såRun all of the tests for the package. This is a automatic test run class to make distutils kind of act like perl. With this you can do: python setup.py build python setup.py install python setup.py test s1Automatically run the test suite for the package.cs yzdS(N((sself((s6/mit/seven/lib/python2.1/site-packages/Martel/setup.pysinitialize_optionsyscs |}dS(N((sself((s6/mit/seven/lib/python2.1/site-packages/Martel/setup.pysfinalize_options|scsR€tiƒ}ƒtidƒ„dk}…|igƒˆti|ƒdS(Nstest(sossgetcwdsthis_dirschdirs run_testssmain(sselfs run_testssthis_dir((s6/mit/seven/lib/python2.1/site-packages/Martel/setup.pysruns  (s__doc__s descriptions user_optionssinitialize_optionssfinalize_optionssrun(((s6/mit/seven/lib/python2.1/site-packages/Martel/setup.pys run_testsks     snamesMartelsversions0.6sauthors>Dalke Scientific Software, LLC of the The Biopython Consortiums author_emails dalke@acm.orgsurls'http://www.biopython.org/~dalke/Martel/scmdclasssinstallstests package_dirspackages(s__doc__ssysspathssys_pathsremoves ValueErrors sre_constantss sre_parsesossdistutils.coressetupsdistutils.command.installsinstallsCommands ImportErrorsexitsNones check_installscheck_mxTextToolss my_installs run_tests( soss sre_parses my_installsinstallscheck_mxTextToolssCommandssyss sre_constantss check_installs run_testsssetupssys_path((s6/mit/seven/lib/python2.1/site-packages/Martel/setup.pys?sB