This is Info file pm.info, produced by Makeinfo version 1.68 from the input file bigpm.texi.  File: pm.info, Node: AI-menu, Next: Module List, Prev: Module List, Up: Module List AI Menu ******* This is the documentation for modules associated with the main module AI. * Menu: * AI/Fuzzy:: Perl extension for Fuzzy Logic * AI/Gene/AI/Gene/Sequence:: AI::Gene::Sequence * AI/Gene/AI/Gene/Simple:: AI::Gene::Simple * AI/Perceptron:: An implementation of a Perceptron  File: pm.info, Node: AOL-menu, Next: Module List, Prev: Module List, Up: Module List AOL Menu ******** This is the documentation for modules associated with the main module AOL. * Menu: * AOL/TOC:: Perl extension for interfacing with AOL's AIM service  File: pm.info, Node: ASP-menu, Next: Module List, Prev: Module List, Up: Module List ASP Menu ******** This is the documentation for modules associated with the main module ASP. * Menu: * ASP Itself: ASP. a Module for ASP (PerlScript) Programming * ASP/NextLink:: Perl implementation of the NextLink ASP component  File: pm.info, Node: Ace-menu, Next: Module List, Prev: Module List, Up: Module List Ace Menu ******** This is the documentation for modules associated with the main module Ace. * Menu: * Ace Itself: Ace. Object-Oriented Access to ACEDB Databases * Ace/Browser/AceSubs:: Subroutines for AceBrowser * Ace/Graphics/Fk:: A dummy feature object used for generating panel key tracks * Ace/Graphics/Glyph:: Base class for Ace::Graphics::Glyph objects * Ace/Graphics/Glyph/anchored_arrow:: The "anchored_arrow" glyph * Ace/Graphics/Glyph/arrow:: The "arrow" glyph * Ace/Graphics/Glyph/group:: The group glyph * Ace/Graphics/Glyph/line:: The "line" glyph * Ace/Graphics/Glyph/primers:: The "STS primers" glyph * Ace/Graphics/Glyph/segments:: The "discontinuous segments" glyph * Ace/Graphics/Glyph/transcript:: The "gene" glyph * Ace/Graphics/GlyphFactory:: Create Ace::Graphics::Glyphs * Ace/Graphics/Panel:: PNG graphics of Ace::Sequence::Feature objects * Ace/Graphics/Track:: PNG graphics of Ace::Sequence::Feature objects * Ace/Iterator:: Iterate Across an ACEDB Query * Ace/Local:: use giface, tace or gifaceclient to open a local connection to an Ace database * Ace/Model:: Get information about AceDB models * Ace/Object:: Manipulate Ace Data Objects * Ace/Sequence:: Examine ACeDB Sequence Objects * Ace/Sequence/Feature:: Examine Sequence Feature Tables * Ace/Sequence/FeatureList:: Lightweight Access to Features * Ace/Sequence/GappedAlignment:: Gapped alignment object * Ace/Sequence/Homol:: Temporary Sequence Homology Class * Ace/Sequence/Multi:: Combine Feature Tables from Multiple Databases * Ace/Sequence/Transcript:: Simple "Gene" Object  File: pm.info, Node: AddressBook-menu, Next: Module List, Prev: Module List, Up: Module List AddressBook Menu **************** This is the documentation for modules associated with the main module AddressBook. * Menu: * AddressBook Itself: AddressBook. Abstract class for using AddressBooks * AddressBook/Config:: AddressBook configuration object * AddressBook/DB/BBDB:: Perl extension for reading and writing bbdb files * AddressBook/DB/DBI:: Backend for AddressBook to use in databases * AddressBook/DB/HTML:: Backend for AddressBook to print entries in HTML format * AddressBook/DB/LDAP:: Backend for AddressBook to use LDAP. * AddressBook/DB/LDIF:: Backend for AddressBook to use LDIF files. * AddressBook/DB/PDB:: Backend for AddressBook to use PDB (PalmOS) Databases. * AddressBook/DB/Text:: Backend for AddressBook to print entries in a simple text format * AddressBook/Entry:: An entry in the AddressBook  File: pm.info, Node: Affix-menu, Next: Module List, Prev: Module List, Up: Module List Affix Menu ********** This is the documentation for modules associated with the main module Affix. * Menu: * Affix/Infix2Postfix:: Perl extension for converting from infix notation to postfix notation.  File: pm.info, Node: Agent-menu, Next: Module List, Prev: Module List, Up: Module List Agent Menu ********** This is the documentation for modules associated with the main module Agent. * Menu: * Agent Itself: Agent. the Transportable Agent Perl module * Agent/Message:: the Transportable Agent Perl module * Agent/Transport:: the Transportable Agent Perl module * Agent/Transport/TCP:: the Transportable Agent Perl module  File: pm.info, Node: Algorithm-menu, Next: Module List, Prev: Module List, Up: Module List Algorithm Menu ************** This is the documentation for modules associated with the main module Algorithm. * Menu: * Algorithm/Diff:: Compute `intelligent' differences between two files / lists * Algorithm/DiffOld:: Compute `intelligent' differences between two files / lists but use the old (<=0.59) interface. * Algorithm/Graphs/TransitiveClosure:: Calculate the transitive closure. * Algorithm/MDiff:: Perl extension for m-differece detection. * Algorithm/MarkovChain:: Object oriented Markov chain generator * Algorithm/Numerical/Sample:: Draw samples from a set * Algorithm/Numerical/Shuffle:: Shuffle a list. * Algorithm/Permute:: Handy and fast permutation with object oriented interface * Algorithm/SISort:: Implementation of Select And Insert sorting algorithm in C  File: pm.info, Node: AltaVista-menu, Next: Module List, Prev: Module List, Up: Module List AltaVista Menu ************** This is the documentation for modules associated with the main module AltaVista. * Menu: * AltaVista/SearchSDK:: Perl extension for AltaVista Search Software Development Kit  File: pm.info, Node: Apache-menu, Next: Module List, Prev: Module List, Up: Module List Apache Menu *********** This is the documentation for modules associated with the main module Apache. * Menu: * Apache Itself: Apache. Perl interface to the Apache server API * Apache/ASP:: Active Server Pages for Apache with mod_perl * Apache/AddHostPath:: Adds some or all of the hostname and port to the URI * Apache/Album:: Simple mod_perl Photo Album * Apache/Archive:: Expose archive files through the Apache web server. * Apache/AuthCookie:: Perl Authentication and Authorization via cookies * Apache/AuthCookieDBI:: An AuthCookie module backed by a DBI database. * Apache/AuthCookieURL:: Perl Authentication and Authorization or session management via cookies or URL munging * Apache/AuthDBI:: Authentication and Authorization via Perl's DBI * Apache/AuthLDAP:: mod_perl LDAP Access Control and Authentication Module * Apache/AuthNetLDAP:: mod_perl module that uses the Net::LDAP module for user authentication for Apache * Apache/AuthPerLDAP:: mod_perl PerLDAP Authentication Module * Apache/AuthTicket:: Cookie based access module. * Apache/AuthenCache:: Authentication caching used in conjuction with a primary authentication module (Apache::AuthenDBI, Apache::AuthenLDAP, etc.) * Apache/AuthenDBI:: Authentication via Perl's DBI * Apache/AuthenLDAP:: mod_perl LDAP Authentication Module * Apache/AuthenNIS:: mod_perl NIS Authentication module * Apache/AuthenPasswd:: mod_perl passwd Authentication module * Apache/AuthenPasswdSrv:: mod_perl Authen Handler * Apache/AuthenRadius:: Authentication via a Radius server * Apache/AuthenSecurID:: Authentication via a SecurID server * Apache/AuthenSmb:: mod_perl NT Authentication module * Apache/AuthenURL:: authenticates via another URL * Apache/AuthzCache:: mod_perl Cache Authorization Module * Apache/AuthzDBI:: Authorization via Perl's DBI * Apache/AuthzLDAP:: mod_perl LDAP Authorization Module * Apache/AuthzNIS:: mod_perl NIS Group Authorization module * Apache/AutoIndex:: Perl replacment for mod_autoindex and mod_dir Apache module * Apache/AxKit/Language:: base class for all processors * Apache/AxKit/Language/NotXSLT:: Matt's non-xslt template processor * Apache/AxKit/Language/XPathScript:: An XML Stylesheet Language * Apache/AxKit/Language/XSP:: eXtensible Server Pages * Apache/AxKit/Language/XSP/Util:: XSP util: taglib. * Apache/AxKit/Plugins/Fragment:: Fragment plugin * Apache/AxKit/Plugins/Passthru:: allow passthru=1 in querystring * Apache/AxKit/Provider:: base Provider class * Apache/AxKit/StyleChooser/Cookie:: Choose stylesheets based on a browser cookie * Apache/AxKit/StyleChooser/FileSuffix:: Choose stylesheet using file suffix * Apache/AxKit/StyleChooser/PathInfo:: Choose stylesheet using PATH_INFO * Apache/AxKit/StyleChooser/QueryString:: Choose stylesheet using querystring * Apache/AxKit/StyleChooser/UserAgent:: Choose stylesheets based on the user agent. * Apache/AxKit/StyleFinder:: Execute module based on * Apache/AxKit/StyleProvider:: DEPRECATED!!! * Apache/AxKit/XMLFinder:: Detects XML files * Apache/CIPP:: Use CIPP embedded HTML Pages with mod_perl * Apache/Clean:: mod_perl interface into HTML::Clean * Apache/Compress:: Auto-compress web files with Gzip * Apache/Constants:: Constants defined in apache header files * Apache/ContentHandler:: mod_perl extension for uniform application generation. * Apache/Cookie:: HTTP Cookies Class * Apache/DB:: Run the interactive Perl debugger under mod_perl * Apache/DBI:: Initiate a persistent database connection * Apache/DBILogConfig:: Logs access information in a DBI database * Apache/DBILogger:: Tracks what's being transferred in a DBI database * Apache/DBILogin:: authenticates and authorizes via a DBI connection * Apache/DProf:: Hook Devel::DProf into mod_perl * Apache/Debug:: Utilities for debugging embedded perl code * Apache/DebugDBI:: Debug Apache::DBI modules * Apache/DebugInfo:: log various bits of per-request data * Apache/Dispatch:: call PerlHandlers with the ease of Registry scripts * Apache/DumpHeaders:: Watch HTTP transaction via headers * Apache/EmbperlChain:: process embedded perl in HTML in the OutputChain * Apache/ExtUtils:: Utils for Apache:C/Perl glue * Apache/FakeRequest:: fake request object for debugging * Apache/File:: advanced functions for manipulating files at the server side * Apache/Filter:: Alter the output of previous handlers * Apache/GD/Graph:: Generate Graphs in an Apache handler. * Apache/GTopLimit:: Limit Apache httpd processes * Apache/Gateway:: A Bloated Gateway Module * Apache/GzipChain:: compress HTML (or anything) in the OutputChain * Apache/HeavyCGI:: Framework to run complex CGI tasks on an Apache server * Apache/HeavyCGI/Date:: represent a date as both unix time and HTTP time * Apache/HeavyCGI/Debug:: inspect the Pseudohash as Hash with Data::Dumper * Apache/HeavyCGI/Exception:: exception class for Apache::HeavyCGI * Apache/HeavyCGI/ExePlan:: Creates an execution plan for Apache::HeavyCGI * Apache/HeavyCGI/IfModified:: Within Apache::HeavyCGI return 304 * Apache/HeavyCGI/Layout:: Represent a page layout in an array * Apache/HeavyCGI/SquidRemoteAddr:: Pass X-Forwarded-For Header through as remote_ip * Apache/HeavyCGI/UnmaskQuery:: Allow queries without a questionmark * Apache/Htaccess:: Create and modify Apache .htaccess files * Apache/Htgroup:: Manage Apache authentication group files * Apache/Htpasswd:: Manage Unix crypt-style password file. * Apache/Icon:: Lookup icon images * Apache/Include:: Utilities for mod_perl/mod_include integration * Apache/Keywords:: Store keywords as a personal profile in a cookie. * Apache/Language:: Perl transparent language support for Apache modules and mod_perl scripts * Apache/Language/Constants:: Apache::Language constants for use by LanguageHandlers * Apache/Language/DBI:: DBI interface for Apache::Language * Apache/Language/PlainFile:: Default LanguageHandler under Apache::Language * Apache/Language/SW:: LanguageHandler for SmartWorker Applications * Apache/Layer:: Layer content tree over one or more others. * Apache/Leak:: Module for tracking memory leaks in mod_perl code * Apache/Log:: Interface to Apache logging * Apache/LogFile:: Interface to Apache's logging routines * Apache/MP3:: Generate streamable directories of MP3 files * Apache/MP3/Playlist:: Manage directories of MP3 files with sorting and persistent playlists * Apache/MP3/Sorted:: Generate sorted streamable directories of MP3 files * Apache/MakeCapital:: convert server output to uppercase * Apache/MimeXML:: mod_perl mime encoding sniffer for XML files * Apache/Mmap:: Associates a scalar with a mmap'd file * Apache/Mmap/Handle:: Associates a file handle with a mmaped file * Apache/Module:: Interface to Apache C module structures * Apache/ModuleDoc:: Self documentation for Apache C modules * Apache/Motd:: Provide motd (Message of the Day) functionality to a webserver * Apache/MyConfig:: build options access * Apache/Mysql:: Initiate a persistent database connection to Mysql * Apache/NNTPGateway:: A NNTP interface for mod_perl enabled Apache web server. * Apache/OWA:: Run OWA applications under Apache/mod_perl * Apache/Options:: OPT_* defines from httpd_core.h * Apache/OutputChain:: chain stacked Perl handlers * Apache/PHLogin:: authenticates via a PH database * Apache/PageKit:: Application framework using mod_perl and HTML::Template * Apache/PageKit/Config:: Reads and provides configuration data. * Apache/PageKit/Content:: Parses and stores content in XML files. * Apache/PageKit/Edit:: Web based editing tools for View templates * Apache/PageKit/Error:: Error Handling under mod_perl * Apache/PageKit/Model:: Base Model Class * Apache/PageKit/Session:: Session Handling * Apache/PageKit/View:: Bridge between Apache::PageKit and HTML::Template * Apache/ParseLog:: Object-oriented Perl extension for parsing Apache log files * Apache/PassExec:: run CGI and catch its output * Apache/PassFile:: print a file to STDOUT * Apache/PassHtml:: print out the html file * Apache/Peek:: A data debugging tool for the XS programmer * Apache/PerlRun:: Run unaltered CGI scripts under mod_perl * Apache/PerlRunFilter:: run Perl scripts in an Apache::Filter chain * Apache/PerlRunXS:: XS implementation of Apache::PerlRun/Apache::Registry * Apache/PerlSections:: Utilities for work with sections * Apache/PerlVINC:: Allows versioning of modules among directories or v-hosts. * Apache/PrettyPerl:: Apache mod_perl PerlHandler for nicer output perl files in the client's browser. * Apache/PrettyText:: A very simple apache mod_perl PerlHandler for text files * Apache/Proxy:: Perl interface to mod_proxy * Apache/Proxy/Info:: Small backend to get information from doc server to mod_perl server * Apache/ProxyPass:: implement ProxyPass in perl * Apache/ProxyPassThru:: Skeleton for vanilla proxy * Apache/ProxyRewrite:: mod_perl URL-rewriting proxy * Apache/ProxyStuff:: mod_perl header/footer/proxy module * Apache/RandomLocation:: Perl extension for mod_perl to handle random locations. * Apache/RedirectDBI:: Redirect requests to different directories based on the existence of a user in one or more database tables * Apache/RedirectLogFix:: Properly set redirect status for loggers * Apache/RefererBlock:: block request based upon referer header * Apache/Registry:: Run unaltered CGI scrips under mod_perl * Apache/RegistryFilter:: run Perl scripts in an Apache::Filter chain * Apache/RegistryLexInfo:: Diff Apache::Registry script padlists * Apache/RegistryLoader:: Compile Apache::Registry scripts at server startup * Apache/Reload:: Reload changed modules * Apache/Request:: Methods for dealing with client request data * Apache/RequestNotes:: pass form and cookie data around in pnotes * Apache/Resource:: Limit resources used by httpd children * Apache/ReverseProxy:: An Apache mod_perl reverse proxy * Apache/RewritingProxy:: proxy that works by rewriting requested documents with no client proxy config needed. * Apache/SIG:: Override apache signal handlers with Perl's * Apache/SOAP:: Provide SOAP server functionality with simple configuration * Apache/SSI:: Implement Server Side Includes in Perl * Apache/SSIChain:: do SSI on other modules' output * Apache/Sandwich:: Layered document (sandwich) maker * Apache/Scoreboard:: Perl interface to the Apache scoreboard structure * Apache/Session:: A persistence framework for session data * Apache/Session/Counted:: Session management via a File::CounterFile * Apache/Session/DBI:: Session persistence via DBI * Apache/Session/DBIBase64Store:: Session persistence via DBI with ASCII encoding of session data. * Apache/Session/DBIStore:: Session persistence via DBI * Apache/Session/DB_File:: An implementation of Apache::Session * Apache/Session/Embperl:: works with HTML::Embperl * Apache/Session/File:: An implementation of Apache::Session * Apache/Session/Flex:: Specify everything at runtime * Apache/Session/Generate/MD5:: Use MD5 to create random object IDs * Apache/Session/IPC:: Store client sessions via IPC::Shareable * Apache/Session/Lock/File:: Provides mutual exclusion using flock * Apache/Session/Lock/MySQL:: Provides mutual exclusion using MySQL * Apache/Session/Lock/Null:: Does not actually provides mutual exclusion * Apache/Session/Lock/Semaphore:: Provides mutual exclusion through sempahores * Apache/Session/MySQL:: An implementation of Apache::Session * Apache/Session/Oracle:: An implementation of Apache::Session * Apache/Session/Postgres:: An implementation of Apache::Session * Apache/Session/Serialize/Base64:: Use Storable and MIME::Base64 to zip up persistent data * Apache/Session/Serialize/Storable:: Use Storable to zip up persistent data * Apache/Session/Serialize/Sybase:: Use Storable to zip up persistent data and unpack/pack to put into Sybase-compatible image field * Apache/Session/Serialize/UUEncode:: Use Storable and pack() to zip up persistent data * Apache/Session/Store/DB_File:: Use DB_File to store persistent objects * Apache/Session/Store/File:: Store persistent data on the filesystem * Apache/Session/Store/MySQL:: Store persistent data in a MySQL database * Apache/Session/Store/Oracle:: Store persistent data in a Oracle database * Apache/Session/Store/Postgres:: Store persistent data in a Postgres database * Apache/Session/Store/Sybase:: Store persistent data in a Sybase database * Apache/Session/Sybase:: An implementation of Apache::Session * Apache/Session/Win32:: Store client sessions in a global hash * Apache/SetWWWTheme:: Standard theme generation, including sidebars and navigation bars * Apache/ShowRequest:: Show phases and module participation * Apache/SimpleReplace:: a simple template framework * Apache/SizeLimit:: Because size does matter. * Apache/SmallProf:: Hook Devel::SmallProf into mod_perl * Apache/Stage:: Manage A Staging Directory * Apache/StatINC:: Reload %INC files when updated on disk * Apache/Status:: Embedded interpreter status information * Apache/Storage:: Storing data in Apache. * Apache/Sybase/CTlib:: Perl extension for creating persistant database connections to sybase using Apache and Sybperl. * Apache/Symbol:: Things for symbol things * Apache/Symdump:: Symbol table snapshots * Apache/Table:: Perl interface to the Apache table structure * Apache/Taco:: mod_perl handler for Taco * Apache/TempFile:: Allocate temporary filenames for the duration of a request * Apache/Template:: Apache/mod_perl interface to the Template Toolkit * Apache/Throttle:: Apache/Perl module for speed-based content negotiation * Apache/Throttle/Log:: Apache/Perl module to determine average speed * Apache/TimedRedirect:: an Apache (mod_perl) TransHandler * Apache/Traffic:: Tracks hits and bytes transferred on a per-user basis * Apache/TransLDAP:: An Apache+mod_perl Trans Handler * Apache/URI:: URI component parsing and unparsing * Apache/UploadSvr:: A Lightweight Publishing System for Apache * Apache/UploadSvr/User:: Identify users and permissions Apache::UploadSvr * Apache/Usertrack:: Emulate the mod_usertrack apache module * Apache/Util:: Interface to Apache C util functions * Apache/VMonitor:: Visual System and Apache Server Monitor * Apache/Watchdog/RunAway:: a monitor for hanging processes * Apache/WebSNMP:: Allows for SNMP calls to be embedded in HTML * Apache/XPP:: MISSING SHORT DESCRIPTION * Apache/XPP/Cache:: XPP Cache manegment module * Apache/XPP/Cache/Expiry:: Cache expiry superclass * Apache/XPP/Cache/Expiry/Duration:: Duration based cache expiry. * Apache/XPP/Cache/Store:: Cache store superclass * Apache/XPP/Cache/Store/File:: flatfile cache store * Apache/XPP/PreParse:: XPP TAG Parser * Apache/httpd_conf:: Generate an httpd.conf file * Apache/iNcom:: An e-commerce framework. * Apache/iNcom/CartManager:: Object responsible for managing the user shopping cart. * Apache/iNcom/Localizer:: Object responsible for the localization of the generated request. * Apache/iNcom/OrderManager:: Module responsible for order management. * Apache/iNcom/Request:: Manages the Apache::iNcom request's informations. * Apache/iNcom/Session:: Apache::Session implementation for Apache::iNcom * Apache/iNcom/SessionLocker:: Manage locks for iNcom's sessions. * Apache/iNcom/UserDBAuthen:: mod_perl authentication handler that use the UserDB. * Apache/iNcom/UserDBAuthz:: mod_perl authorization handler that use the UserDB. * Apache/libapreq:: Generate compiler and linker flags for libapreq * Apache/src:: Methods for locating and parsing bits of Apache source code * Apache/test:: Facilitates testing of Apache::* modules  File: pm.info, Node: App-menu, Next: Module List, Prev: Module List, Up: Module List App Menu ******** This is the documentation for modules associated with the main module App. * Menu: * App/Config:: Perl5 extension for managing global application configuration information. * App/Manager:: Perl module for installing, managing and uninstalling software packages.  File: pm.info, Node: AppConfig-menu, Next: Module List, Prev: Module List, Up: Module List AppConfig Menu ************** This is the documentation for modules associated with the main module AppConfig. * Menu: * AppConfig Itself: AppConfig. Perl5 module for reading configuration files and parsing command line arguments. * AppConfig/Args:: Perl5 module for reading command line arguments. * AppConfig/File:: Perl5 module for reading configuration files. * AppConfig/Getopt:: Perl5 module for processing command line arguments via delegation to Getopt::Long. * AppConfig/MyFile:: Perl5 module for reading configuration files. * AppConfig/State:: Perl5 module for maintaining the state of an application configuration. * AppConfig/Std:: subclass of AppConfig which provides standard options * AppConfig/Sys:: Perl5 module defining platform-specific information and methods for other AppConfig::* modules.  File: pm.info, Node: AppleII-menu, Next: Module List, Prev: Module List, Up: Module List AppleII Menu ************ This is the documentation for modules associated with the main module AppleII. * Menu: * AppleII/Disk:: Block-level access to Apple II disk image files * AppleII/ProDOS:: Access files on Apple II ProDOS disk images  File: pm.info, Node: Archive-menu, Next: Module List, Prev: Module List, Up: Module List Archive Menu ************ This is the documentation for modules associated with the main module Archive. * Menu: * Archive/Tar:: module for manipulation of tar archives. * Archive/Zip:: Provide an interface to ZIP archive files. * Archive/Zip/Tree:: methods for adding/extracting trees using Archive::Zip  File: pm.info, Node: Array-menu, Next: Module List, Prev: Module List, Up: Module List Array Menu ********** This is the documentation for modules associated with the main module Array. * Menu: * Array/Compare:: Perl extension for comparing arrays. * Array/FileReader:: Lazily tie files to arrays for reading * Array/IntSpan:: a Module for handling arrays using IntSpan techniques * Array/IntSpan/IP:: a Module for arrays using IP addresses as indices * Array/Lookup:: Lookup strings in arrays or hash tables with abbreviation. * Array/PrintCols:: Print or format array elements in vertically sorted columns. * Array/RefElem:: Set up array elements as aliases * Array/Reform:: Convert an array into N-sized array of arrays  File: pm.info, Node: AsciiDB-menu, Next: Module List, Prev: Module List, Up: Module List AsciiDB Menu ************ This is the documentation for modules associated with the main module AsciiDB. * Menu: * AsciiDB/TagFile:: Tie class for a simple ASCII database  File: pm.info, Node: Astro-menu, Next: Module List, Prev: Module List, Up: Module List Astro Menu ********** This is the documentation for modules associated with the main module Astro. * Menu: * Astro/Coord:: Astronomical coordinate transformations * Astro/Misc:: Miscellaneous astronomical routines * Astro/MoonPhase:: Information about the phase of the moon * Astro/SLA:: perl interface to SLAlib positional astronomy library * Astro/Time:: Time based astronomical routines  File: pm.info, Node: Async-menu, Next: Module List, Prev: Module List, Up: Module List Async Menu ********** This is the documentation for modules associated with the main module Async. * Menu: * Async Itself: Async. Asynchronous evaluation of Perl code (with optional timeouts) * Async/Group:: Perl class to deal with simultaneous asynchronous calls  File: pm.info, Node: Audio-menu, Next: Module List, Prev: Module List, Up: Module List Audio Menu ********** This is the documentation for modules associated with the main module Audio. * Menu: * Audio/CD:: Perl interface to libcdaudio (cd + cddb) * Audio/CoolEdit:: Modules for reading & writing Syntrillium CoolEdit Pro .ses files. * Audio/CoolEdit/Read:: Methods for reading Syntrillium CoolEdit Pro .ses files. * Audio/CoolEdit/Write:: Methods for writing Syntrillium CoolEdit Pro .ses files. * Audio/DSP:: Perl interface to *NIX digital audio device. * Audio/MikMod:: Perl extension for libmikmod. * Audio/Mix:: Module for fading cross-fading wav audio files. * Audio/Play/MPG123:: a frontend to mpg123 version 0.59r and beyond. * Audio/SoundFile:: Perl interface to libsndfile, a sound I/O library * Audio/SoundFile/Header:: Interface to handle sound format information * Audio/SoundFile/Reader:: Reader class for various sound formats * Audio/SoundFile/Writer:: Writer class for various sound formats * Audio/Tools:: Common Tools for Audio::Wav, Audio::Mix & Audio::CoolEdit * Audio/Tools/ByteOrder:: Unpacking rules for little endian machines. * Audio/Tools/Fades:: Fading in & out algorithms. * Audio/Tools/Time:: time / sample / byte conversion tools. * Audio/Wav:: Modules for reading & writing Microsoft Wav files. * Audio/Wav/Read:: Module for reading Microsoft Wav files. * Audio/Wav/Write:: Module for writing Microsoft Wav files.  File: pm.info, Node: AudioCD-menu, Next: Module List, Prev: Module List, Up: Module List AudioCD Menu ************ This is the documentation for modules associated with the main module AudioCD. * Menu: * AudioCD Itself: AudioCD. Module for basic Audio CD control * AudioCD/Mac:: MacPerl extension for controlling Audio CDs  File: pm.info, Node: Authen-menu, Next: Module List, Prev: Module List, Up: Module List Authen Menu *********** This is the documentation for modules associated with the main module Authen. * Menu: * Authen/ACE:: Perl extension for accessing a SecurID ACE server * Authen/Challenge/Basic:: A Basic challenge/response authentication scheme. * Authen/FAQ:: Frequently-Asked Questions about Authen::PAM. * Authen/Krb4:: Perl extension for Kerberos 4 * Authen/Krb5:: Perl extension for Kerberos 5 * Authen/Libwrap:: access to Wietse Venema's TCP Wrappers library * Authen/PAM:: Perl interface to PAM library * Authen/PIN:: Create and verify strong PIN numbers * Authen/Prot:: Perl extension for accessing protected password database * Authen/SASL:: SASL Authentication base class * Authen/Smb:: Perl extension to authenticate against an SMB server * Authen/TacacsPlus:: Perl extension for authentication using tacacs+ server * Authen/Ticket:: Perl extension for implementing ticket authentication * Authen/Ticket/Client:: Authentication code for the client website * Authen/Ticket/Server:: Perl extension for implementing ticket authentication. * Authen/Ticket/Signature:: MISSING SHORT DESCRIPTION  File: pm.info, Node: Aviation-menu, Next: Module List, Prev: Module List, Up: Module List Aviation Menu ************* This is the documentation for modules associated with the main module Aviation. * Menu: * Aviation/Report:: Perl extension for translating U.S. METAR, TAF and PIREP textual reports into plain English.  File: pm.info, Node: Aw-menu, Next: Module List, Prev: Module List, Up: Module List Aw Menu ******* This is the documentation for modules associated with the main module Aw. * Menu: * Aw Itself: Aw. Perl extension for the ActiveWorks C Application Development Kit * Aw/Adapter:: ActiveWorks Adapter Module. * Aw/Client:: ActiveWorks Client Module. * Aw/ClientX:: ActiveWorks Client Module. * Aw/ConnectionDescriptor:: ActiveWorks Connection Descriptor Module. * Aw/Event:: ActiveWorks Event Module. * Aw/License:: ActiveWorks License Module. * Aw/Log:: ActiveWorks Log Module. * Aw/TypeDef:: ActiveWorks TypeDef Module. * Aw/Util:: ActiveWorks Connection Descriptor Module.  File: pm.info, Node: AxKit-menu, Next: Module List, Prev: Module List, Up: Module List AxKit Menu ********** This is the documentation for modules associated with the main module AxKit. * Menu: * AxKit Itself: AxKit. an XML Delivery Toolkit for Apache * AxKit/XSP/ESQL:: An Extended SQL taglib for AxKit eXtensible Server Pages * AxKit/XSP/Exception:: Exceptions taglib for eXtensible Server Pages * AxKit/XSP/Param:: A namespace wrapper for accessing HTTP request paramaters. * AxKit/XSP/Sendmail:: Simple SMTP mailer tag library for AxKit eXtesible Server Pages. * AxKit/XSP/Util:: XSP util: taglib.  File: pm.info, Node: B-menu, Next: Module List, Prev: Module List, Up: Module List B Menu ****** This is the documentation for modules associated with the main module B. * Menu: * B Itself: B. The Perl Compiler * B/Asmdata:: Autogenerated data about Perl ops, used to generate bytecode * B/Assembler:: Assemble Perl bytecode * B/Bblock:: Walk basic blocks * B/Bytecode:: Perl compiler's bytecode backend * B/C:: Perl compiler's C backend * B/CC:: Perl compiler's optimized C translation backend * B/Debug:: Walk Perl syntax tree, printing debug info about ops * B/Deparse:: Perl compiler backend to produce perl code * B/Disassembler:: Disassemble Perl bytecode * B/Fathom:: a module to evaluate the readability of Perl code * B/FindAmpersand:: A compiler backend to find variables that set sawampersand * B/Generate:: Create your own op trees. * B/Graph:: Perl compiler backend to produce graphs of OP trees * B/JVM/Emit:: Package used by B::JVM to emit Java Bytecode * B/JVM/Jasmin:: Perl Backend module for generating JVM code via Jasmin Assembler * B/JVM/Jasmin/CompileState:: Internal package used by B::JVM::Jasmin to keep state of compilation * B/JVM/Jasmin/Emit:: Package used by B::JVM::Jasmin to emit Jasmin syntaxed file * B/JVM/Utils:: Utility functions for B::JVM * B/LexInfo:: Show information about subroutine lexical variables * B/Lint:: Perl lint * B/Showlex:: Show lexical variables used in functions or files * B/Size:: Measure size of Perl OPs and SVs * B/Stackobj:: Helper module for CC backend * B/Terse:: Walk Perl syntax tree, printing terse info about ops * B/TerseSize:: Printing info about ops and their (estimated) size * B/Tree:: Simplified version of B::Graph for demonstration * B/Xref:: Generates cross reference reports for Perl programs  File: pm.info, Node: BIND-menu, Next: Module List, Prev: Module List, Up: Module List BIND Menu ********* This is the documentation for modules associated with the main module BIND. * Menu: * BIND/Conf_Parser:: Parser class for BIND configuration files  File: pm.info, Node: BSD-menu, Next: Module List, Prev: Module List, Up: Module List BSD Menu ******** This is the documentation for modules associated with the main module BSD. * Menu: * BSD/Ipfwgen:: Module to aid in the creation of ipfw-based firewalls * BSD/Itimer:: Perl extension for accessing interval timers * BSD/Resource:: BSD process resource limit and priority functions  File: pm.info, Node: BTRIEVE-menu, Next: Module List, Prev: Module List, Up: Module List BTRIEVE Menu ************ This is the documentation for modules associated with the main module BTRIEVE. * Menu: * BTRIEVE/SAVE:: Perl extension to manipulate BTRIEVE SAVE records.  File: pm.info, Node: Barcode-menu, Next: Module List, Prev: Module List, Up: Module List Barcode Menu ************ This is the documentation for modules associated with the main module Barcode. * Menu: * Barcode/Code128:: Generate CODE 128 bar codes * Barcode/Cuecat:: Perl extension for decoding :CueCat(tm) scans  File: pm.info, Node: Be-menu, Next: Module List, Prev: Module List, Up: Module List Be Menu ******* This is the documentation for modules associated with the main module Be. * Menu: * Be/Attribute:: get and set MIME file attributes * Be/Query:: do a Query for a given filesystem.  File: pm.info, Node: Befunge-menu, Next: Module List, Prev: Module List, Up: Module List Befunge Menu ************ This is the documentation for modules associated with the main module Befunge. * Menu: * Befunge/Interpreter:: Perl extension for interpreting befunge.  File: pm.info, Node: BingoX-menu, Next: Module List, Prev: Module List, Up: Module List BingoX Menu *********** This is the documentation for modules associated with the main module BingoX. * Menu: * BingoX/Argon:: Common methods used by many application classes. * BingoX/Carbon:: An object oriented database abstraction superclass * BingoX/Chromium:: Generic BingoX Admin module * BingoX/Cobalt:: Cobalt display parent class containing generic methods * BingoX/Time:: Time display parent class containing generic methods  File: pm.info, Node: Bio-menu, Next: Module List, Prev: Module List, Up: Module List Bio Menu ******** This is the documentation for modules associated with the main module Bio. * Menu: * Bio/AlignIO:: Handler for AlignIO Formats * Bio/AlignIO/bl2seq:: bl2seq sequence input/output stream * Bio/AlignIO/clustalw:: clustalw sequence input/output stream * Bio/AlignIO/fasta:: fasta sequence input/output stream * Bio/AlignIO/mase:: mase sequence input/output stream * Bio/AlignIO/msf:: msf sequence input/output stream * Bio/AlignIO/pfam:: pfam sequence input/output stream * Bio/AlignIO/prodom:: prodom sequence input/output stream * Bio/AlignIO/selex:: selex sequence input/output stream * Bio/AlignIO/stockholm:: stockholm sequence input/output stream * Bio/Annotation:: A generic object for annotations * Bio/Annotation/Comment:: A comment object, holding text * Bio/Annotation/DBLink:: DESCRIPTION of Object * Bio/Annotation/Reference:: Specialised DBLink object for Literature References * Bio/DB/Ace:: Database object interface to ACeDB servers * Bio/DB/BioSeqI:: Abstract interface for a sequence database * Bio/DB/GDB:: Database object interface to GDB HTTP query * Bio/DB/GenBank:: Database object interface to GenBank * Bio/DB/GenPept:: Database object interface to GenPept * Bio/DB/NCBIHelper:: A collection of routines useful for queries to NCBI databases. * Bio/DB/RandomAccessI:: Abstract interface for a sequence database * Bio/DB/SeqI:: Abstract Interface for Sequence databases * Bio/DB/SwissProt:: Database object interface to SwissProt retrieval * Bio/DB/UpdateableSeqI:: An interface for writing to a database of sequences. * Bio/DB/WebDBSeqI:: Object Interface to generalize Web Databases for retrieving sequences * Bio/DBLinkContainerI:: Abstract interface for any object wanting to use database cross references * Bio/Factory/DriverFactory:: Base class for factory classes loading drivers * Bio/Factory/SeqAnalysisParserFactory:: class capable of creating SeqAnalysisParserI compliant parsers * Bio/Factory/SeqAnalysisParserFactoryI:: interface describing objects capable of creating SeqAnalysisParserI compliant parsers * Bio/Index/Abstract:: Abstract interface for indexing a flat file * Bio/Index/AbstractSeq:: Base class for AbstractSeq s * Bio/Index/EMBL:: Interface for indexing (multiple) EMBL/Swissprot .dat files (ie flat file embl/swissprot format). * Bio/Index/Fasta:: Interface for indexing (multiple) fasta files * Bio/Index/GenBank:: Interface for indexing (multiple) GenBank .seq files (ie flat file GenBank format). * Bio/Index/SwissPfam:: Interface for indexing swisspfam files * Bio/Index/Swissprot:: Interface for indexing (multiple) Swissprot .dat files (ie flat file swissprot format). * Bio/LiveSeq/AARange:: AARange abstract class for LiveSeq * Bio/LiveSeq/Chain:: DoubleChain DataStructure for Perl * Bio/LiveSeq/ChainI:: Double linked chain data structure * Bio/LiveSeq/DNA:: DNA object for LiveSeq * Bio/LiveSeq/Exon:: Range abstract class for LiveSeq * Bio/LiveSeq/Gene:: Range abstract class for LiveSeq * Bio/LiveSeq/IO/BioPerl:: Loader for LiveSeq from EMBL entries with BioPerl * Bio/LiveSeq/IO/Loader:: Parent Loader for LiveSeq * Bio/LiveSeq/IO/SRS:: Loader for LiveSeq from EMBL entries with SRS * Bio/LiveSeq/Intron:: Range abstract class for LiveSeq * Bio/LiveSeq/Mutation:: Mutation event descriptor class * Bio/LiveSeq/Mutator:: Package mutating LiveSequences * Bio/LiveSeq/Prim_Transcript:: Prim_Transcript class for LiveSeq * Bio/LiveSeq/Range:: Range abstract class for LiveSeq * Bio/LiveSeq/Repeat_Region:: Repeat_Region class for LiveSeq * Bio/LiveSeq/Repeat_Unit:: Repeat_Unit class for LiveSeq * Bio/LiveSeq/SeqI:: Abstract sequence interface class for LiveSeq * Bio/LiveSeq/Transcript:: Transcript class for LiveSeq * Bio/LiveSeq/Translation:: Translation class for LiveSeq * Bio/LocatableSeq:: A Sequence object with start/end points on it * Bio/Location/AvWithinCoordPolicy:: class implementing Bio::Location::CoordinatePolicy as the average for WITHIN and the widest possible and reasonable range otherwise * Bio/Location/CoordinatePolicyI:: Abstract interface for objects implementing a certain policy of computing integer-valued coordinates of a Location * Bio/Location/Fuzzy:: Implementation of a Location on a Sequence which has unclear start and/or end locations * Bio/Location/FuzzyLocationI:: Abstract interface of a Location on a Sequence which has unclear start/end location * Bio/Location/NarrowestCoordPolicy:: class implementing Bio::Location::CoordinatePolicy as the narrowest possible and reasonable range * Bio/Location/Simple:: Implementation of a Simple Location on a Sequence * Bio/Location/Split:: Implementation of a Location on a Sequence which has multiple locations (start/end points) * Bio/Location/SplitLocationI:: Abstract interface of a Location on a Sequence which has multiple locations (start/end points) * Bio/Location/WidestCoordPolicy:: class implementing Bio::Location::CoordinatePolicy as the widest possible and reasonable range * Bio/LocationI:: Abstract interface of a Location on a Sequence * Bio/Parse:: The Bioperl ReadSeq interface * Bio/PrimarySeq:: Bioperl lightweight Sequence Object * Bio/PrimarySeqI:: Interface definition for a Bio::PrimarySeq * Bio/Range:: Pure perl RangeI implementation * Bio/RangeI:: Range interface * Bio/Root/Err:: Exception class for Perl 5 objects * Bio/Root/Global:: Global variables and utility functions * Bio/Root/IO:: module providing several methods often needed when dealing with file IO * Bio/Root/IOManager:: Input and output manager for Perl5 objects. * Bio/Root/Object:: A core Perl 5 object. * Bio/Root/RootI:: Abstract interface to root object code * Bio/Root/Utilities:: General-purpose utility module * Bio/Root/Vector:: Interface for managing linked lists of Perl5 objects. * Bio/Root/Xref:: A generic cross-reference object. * Bio/Search/Hit/Fasta:: Hit object specific for Fasta-generated hits * Bio/Search/Hit/HitI:: Abstract interface for Hit objects * Bio/Search/Processor:: DESCRIPTION of Object * Bio/Search/Processor/Fasta:: Processor of Fasta-generated data streams * Bio/Search/Processor/ProcessorI:: Abstract Interface for Processor Objects * Bio/Search/Result/Fasta:: Result object for FASTA-generated data sources * Bio/Search/Result/ResultI:: Abstract interface to Result objects * Bio/SearchDist:: A perl wrapper around Sean Eddy's histogram object * Bio/Seq:: Sequence object, with features * Bio/Seq/LargePrimarySeq:: PrimarySeq object that stores sequence as files in the tempdir (as found by File::Temp) or the default method in Bio::Root::RootI * Bio/Seq/LargeSeq:: SeqI compliant object that stores sequence as files in /tmp * Bio/Seq/RichSeq:: Module implementing a sequence created from a rich sequence database entry * Bio/Seq/RichSeqI:: RichSeq interface, mainly for database orientated sequences * Bio/SeqAnalysisParserI:: Sequence analysis output parser interface * Bio/SeqFeature/FeaturePair:: hold pair feature information e.g. blast hits * Bio/SeqFeature/Gene/Exon:: a feature representing an exon * Bio/SeqFeature/Gene/ExonI:: Interface for a feature representing an exon * Bio/SeqFeature/Gene/GeneStructure:: A feature representing an arbitrarily complex structure of a gene * Bio/SeqFeature/Gene/GeneStructureI:: A feature representing an arbitrarily complex structure of a gene * Bio/SeqFeature/Gene/Transcript:: A feature representing a transcript * Bio/SeqFeature/Gene/TranscriptI:: Interface for a feature representing a transcript of exons, promoter(s), UTR, and a poly-adenylation site. * Bio/SeqFeature/Generic:: Generic SeqFeature * Bio/SeqFeature/Similarity:: A sequence feature based on similarity * Bio/SeqFeature/SimilarityPair:: Sequence feature based on the similarity of two sequences. * Bio/SeqFeatureI:: Abstract interface of a Sequence Feature * Bio/SeqI:: Abstract Interface of Sequence (with features) * Bio/SeqIO:: Handler for SeqIO Formats * Bio/SeqIO/EMBL:: EMBL sequence input/output stream * Bio/SeqIO/FTHelper:: Helper class for Embl/Genbank feature tables * Bio/SeqIO/Fasta:: Fasta sequence input/output stream * Bio/SeqIO/GCG:: Raw sequence input/output stream * Bio/SeqIO/Handler:: Handler of the SeqIO classes for tieing to filehandles * Bio/SeqIO/MultiFile:: Treating a set of files as a single input stream * Bio/SeqIO/Raw:: Raw sequence input/output stream * Bio/SeqIO/ace:: ace sequence input/output stream * Bio/SeqIO/embl:: EMBL sequence input/output stream * Bio/SeqIO/fasta:: fasta sequence input/output stream * Bio/SeqIO/game:: Parses GAME XML 0.1 and higher into and out of Bio::Seq objects. * Bio/SeqIO/gcg:: GCG sequence input/output stream * Bio/SeqIO/genbank:: GenBank sequence input/output stream * Bio/SeqIO/largefasta:: method i/o on very large fasta sequence files * Bio/SeqIO/pir:: PIR sequence input/output stream * Bio/SeqIO/raw:: raw sequence file input/output stream * Bio/SeqIO/scf:: SCF sequence input/output stream * Bio/SeqIO/swiss:: Swissprot sequence input/output stream * Bio/SeqUtils:: Additional methods for PrimarySeq objects * Bio/SimpleAlign:: Multiple alignments held as a set of sequences * Bio/Species:: Generic species object * Bio/Tk/GO_Browser:: MISSING SHORT DESCRIPTION * Bio/Tk/HitDisplay:: Frame-based widget for displaying Fasta or Blast hits/HSPs with optional text annotation * Bio/Tk/SeqCanvas:: MISSING SHORT DESCRIPTION * Bio/Tools/AlignFactory:: Base object for alignment factories * Bio/Tools/AnalysisResult:: Base class for analysis result objects and parsers * Bio/Tools/BPbl2seq:: Lightweight BLAST parser for pair-wise sequence alignment using the BLAST algorithm. * Bio/Tools/BPlite:: Lightweight BLAST parser * Bio/Tools/BPlite/HSP:: MISSING SHORT DESCRIPTION * Bio/Tools/BPlite/Iteration:: object for parsing single iteration of a PSIBLAST report * Bio/Tools/BPlite/Sbjct:: MISSING SHORT DESCRIPTION * Bio/Tools/BPpsilite:: Lightweight BLAST parser for (iterated) psiblast reports * Bio/Tools/Blast:: Bioperl BLAST sequence analysis object * Bio/Tools/Blast/HSP:: Bioperl BLAST High-Scoring Segment Pair object * Bio/Tools/Blast/HTML:: Bioperl Utility module for HTML formatting Blast reports * Bio/Tools/Blast/Run/LocalBlast:: Bioperl module for running Blast analyses locally. * Bio/Tools/Blast/Run/Webblast:: Bioperl module for running Blast analyses using a HTTP interface. * Bio/Tools/Blast/Sbjct:: Bioperl BLAST "Hit" object * Bio/Tools/CodonTable:: Bioperl codon table object * Bio/Tools/ESTScan:: Results of one ESTScan run * Bio/Tools/Fasta:: Bioperl Fasta utility object * Bio/Tools/GFF:: A Bio::SeqAnalysisParserI compliant GFF format parser * Bio/Tools/Genscan:: Results of one Genscan run * Bio/Tools/HMMER/Domain:: One particular domain hit from HMMER * Bio/Tools/HMMER/Results:: Object representing HMMER output results * Bio/Tools/HMMER/Set:: Set of identical domains from HMMER matches * Bio/Tools/IUPAC:: Generates unique Seq objects from an ambiguous Seq object * Bio/Tools/MZEF:: Results of one MZEF run * Bio/Tools/OddCodes:: Object holding alternative alphabet coding for one protein sequence * Bio/Tools/Prediction/Exon:: A predicted exon feature * Bio/Tools/Prediction/Gene:: a predicted gene structure feature * Bio/Tools/RestrictionEnzyme:: Bioperl object for a restriction endonuclease object. * Bio/Tools/Run/Alignment/Clustalw:: Object for the calculation of a multiple sequence alignment from a set of unaligned sequences or alignments using the Clustalw program * Bio/Tools/Run/Alignment/TCoffee:: Object for the calculation of a multiple sequence alignment from a set of unaligned sequences or alignments using the TCoffee program * Bio/Tools/Run/StandAloneBlast:: Object for the local execution of the NCBI Blast program suite (blastall, blastpgp, bl2seq) * Bio/Tools/SeqAnal:: Bioperl sequence analysis base class. * Bio/Tools/SeqPattern:: Bioperl object for a sequence pattern or motif * Bio/Tools/SeqStats:: Object holding statistics for one particular sequence * Bio/Tools/SeqWords:: Object holding n-mer statistics for one sequence * Bio/Tools/Sigcleave:: Bioperl object for sigcleave analysis * Bio/Tools/Sim4/Exon:: A single exon determined by an alignment * Bio/Tools/Sim4/Results:: Results of one Sim4 run * Bio/Tools/WWW:: Bioperl manager for web resources related to biology. * Bio/Tools/pSW:: pairwise Smith Waterman object * Bio/UnivAln:: Bioperl alignment object * Bio/Variation/AAChange:: Sequence change class for polypeptides * Bio/Variation/AAReverseMutate:: point mutation and codon information from single amino acid changes * Bio/Variation/Allele:: Sequence object with allele-specific attributes * Bio/Variation/DNAMutation:: DNA level mutation class * Bio/Variation/IO:: Handler for sequence variation IO Formats * Bio/Variation/IO/flat:: flat file sequence variation input/output stream * Bio/Variation/IO/xml:: XML sequence variation input/output stream * Bio/Variation/RNAChange:: Sequence change class for RNA level * Bio/Variation/SeqDiff:: Container class for mutation/variant descriptions * Bio/Variation/VariantI:: Sequence Change SeqFeature abstract class  File: pm.info, Node: Bit-menu, Next: Module List, Prev: Module List, Up: Module List Bit Menu ******** This is the documentation for modules associated with the main module Bit. * Menu: * Bit/ShiftReg:: Bit Shift Registers with Rotate / Shift Operations * Bit/Vector:: Efficient bit vector, set of integers and "big int" math library * Bit/Vector/Overload:: Overloaded operators add-on for Bit::Vector  File: pm.info, Node: Bone-menu, Next: Module List, Prev: Module List, Up: Module List Bone Menu ********* This is the documentation for modules associated with the main module Bone. * Menu: * Bone/Easy:: Perl module for generating pickup lines. * Bone/Easy/Rules:: Default ruleset for Bone::Easy  File: pm.info, Node: Boulder-menu, Next: Module List, Prev: Module List, Up: Module List Boulder Menu ************ This is the documentation for modules associated with the main module Boulder. * Menu: * Boulder Itself: Boulder. An API for hierarchical tag/value structures * Boulder/Blast:: Parse and read BLAST files * Boulder/Blast/NCBI:: Parse and read NCBI BLAST files * Boulder/Blast/WU:: Parse and read WU-BLAST files * Boulder/Genbank:: Fetch Genbank data records as parsed Boulder Stones * Boulder/Medline:: Fetch Medline data records as parsed Boulder Stones * Boulder/Omim:: Fetch Omim data records as parsed Boulder Stones * Boulder/Store:: Simple persistent storage for Stone tag/value objects * Boulder/Stream:: Read and write tag/value data from an input stream * Boulder/Swissprot:: Fetch SwissProt data records as parsed Boulder Stones * Boulder/Unigene:: Fetch Unigene data records as parsed Boulder Stones * Boulder/XML:: XML format input/output for Boulder streams  File: pm.info, Node: Bundle-menu, Next: Module List, Prev: Module List, Up: Module List Bundle Menu *********** This is the documentation for modules associated with the main module Bundle. * Menu: * Bundle/ABH:: A bundle to install all Ask's favorite modules * Bundle/AO/Base:: libraries needed for AO servlet engine * Bundle/AO/Standard:: libraries needed by standard AO interceptors * Bundle/Apache:: Install Apache mod_perl and related modules * Bundle/Apache/ASP:: Install Apache::ASP and related modules * Bundle/BioPerl:: A bundle to install external CPAN modules used by BioPerl * Bundle/Bugzilla:: A bundle of the modules required for Bugzilla. * Bundle/Bundle-Expect:: Everything that Expect.pm needs * Bundle/CPAN:: A bundle to play with all the other modules on CPAN * Bundle/Cisco/Conf:: A bundle to install the Cisco::Conf module. * Bundle/DBD/CSV:: A bundle to install the DBD::CSV driver * Bundle/HTML/EP:: A bundle to install the HTML::EP package * Bundle/HTML/Mason:: A bundle to install the HTML::Mason package * Bundle/Interchange:: A bundle of the modules nice to have for Interchange. * Bundle/IspMailGate:: A bundle to install the IspMailGate email filter. * Bundle/LWP:: A bundle to install all libwww-perl related modules * Bundle/MP3:: A bundle to install all MP3-related modules * Bundle/Mail/IspMailGate:: A bundle to install the IspMailGate * Bundle/Minivend:: A nice to have modules for MiniVend * Bundle/Msql:: A bundle to install Perl drivers for mSQL or MySQL * Bundle/Mysql:: A bundle to install Perl drivers for mSQL or MySQL * Bundle/Net/LDAP:: A bundle for Net::LDAP * Bundle/OpenInteract:: Bundle to install all the pre-requisites for OpenInteract * Bundle/ParallelUA:: CPAN Bundle for the LWP Parallel User Agent extension * Bundle/PlRPC:: A bundle to install PlRPC-Server, Client and prerequisites. * Bundle/SNMP/MIB/Compiler:: A bundle to install all SNMP::MIB::Compiler related modules * Bundle/SPOPS:: Bundle to install all the pre-requisites for SPOPS * Bundle/Search/InvertedIndex:: A bundle to install all Search::InvertedIndex related modules * Bundle/Slash:: A bundle to install all modules used for Slash * Bundle/Tie/DB_File/SplitHash:: A bundle to install all Tie::DB_File::SplitHash related modules * Bundle/Tie/FileLRUCache:: A bundle to install all Tie::FileLRUCache related modules * Bundle/Tk:: CPAN Bundle for Tk and its dependencies * Bundle/WWW/Search:: A bundle to install basic WWW::Search modules and prerequisites * Bundle/WWW/Search/ALL:: A bundle to install all WWW::Search modules and backends * Bundle/Weather:: a collection of modules for processing weather products * Bundle/Wizard:: A bundle to install all the application Wizard * Bundle/Wizard/LDAP:: A bundle to install all the LDAP Wizard * Bundle/XML:: A bundle to install all XML-related modules * Bundle/Xmms:: Bundle for xmms remote control shell * Bundle/libnet:: A bundle to install all libnet related modules * Bundle/pRPC-modules:: modules - A bundle to install pRPC-modules and prerequisites