####################################################################### # # $Id: devel.mk,v 6.4 1999/11/09 17:44:35 kimelman Exp $ # # SGI options NCBI_SYBLIBS_CT = -L$(NCBI_SYBASE)/lib -lblk -lct -lcs -ltcl -lcomn -lintl include $(NCBI)/ncbi.mk SHELL=$(NCBI_MAKE_SHELL) CC = $(NCBI_CC) INCPATH = $(NCBI_INCDIR) # here is sybase and related libriries required for pubstruct access PSLIBS=-lnlmzip -lctutils $(SYBLIBRARY) CONFIG=.makeconf STATE=.options # # DEFAULT target # default: compile $(CONFIG): @echo "You should run ./make-tool.sh --config $(CONFIG) [options..] to set environment" @echo "./make-tool.sh --help give you details" @echo "or run make with either 'production' or 'debug' target to set it" @echo "setting 'debug' default ...." ./make-tool.sh --config $(CONFIG) --mode=development include $(CONFIG) CFLAGS = -I. $(CFLAGS1) $(CFLAGS_C) $(OPTFLAG) -I$(INCPATH) $(NCBI_SYBFLAG) LDFLAGS = $(LDFLAGS1) $(LDFLAGS_C) $(OPTFLAG) -L$(LIBPATH) .c.o : $(CC) $(CFLAGS) -c $< # # customization targets # production: ./make-tool.sh --config $(CONFIG) --mode=production debug: ./make-tool.sh --config $(CONFIG) --mode=development # # source update target # update index/st_configure.sh : @[ -d index ] || cvs -q checkout -d index internal/pubmed/pmentrez/scripts/indexing @cvs -q update # # internal targets : serve for recompilation enforcement if CFLAGS changed # $(STATE): @echo "$(CFLAGS) $(LDFLAGS) $(TARGETS) $(PURIFY)" >$(STATE) checks : $(STATE) @echo "$(CFLAGS) $(LDFLAGS) $(TARGETS)" >.$(STATE) @diff .$(STATE) $(STATE) >/dev/null || ( echo updating '$(STATE)' ; cp .$(STATE) $(STATE) ; rm .recompile ) @rm -f .$(STATE) .recompile: $(STATE) devel.mk $(CONFIG) @echo updating '.recompile' @-rm -f *.o @date >$@ prolog: checks .recompile ## ## ## compile: $(TARGET:=.compile) install: $(TARGET:=.install) try : $(TARGET:=.test) clean : - rm -f *.o *~ *% \#* *.a *.test *.install rm $(STATE) for fn in mmdbsrv mmdbsrv.FF mmdbsrv.PS vastsrv vastsrv.FF vastsrv.PS loader ; do [ ! -f $$fn ] || rm -f $$fn ; done # # web scripts settings # WEB_SCRIPTS=wrapper.sh wrapper_lib.sh st_configure.sh WEB_SCRIPTS_SRC=wrapper.sh wrapper_lib.sh index/st_configure.sh $(webdir)/.syb_set : $(WEB_SCRIPTS_SRC) [ ! -f $@ ] || rm -rf $@ cd ${webdir} ; rm -f $(WEB_SCRIPTS) ; cp $(WEB_SCRIPTS_SRC) $(webdir) cd ${webdir} ; chmod a+x $(WEB_SCRIPTS) cd ${webdir} ; SYBASE=$(NCBI_SYBASE) ; export SYBASE ; ./st_configure.sh web: $(webdir) $(webdir)/.syb_set # # MMDBSRV # MMDBLIBS= -lncbimmdb -lncbiNacc -lnetentr -lnetcli -lncbicdr -lncbiobj -lncbi $(NCBI_OTHERLIBS) MMDB_OBJ= mmdbsrv.o mmdbsrv.FF: mmdbsrv.o mmdbFF.o $(PURIFY) $(CC) -o $@ $(LDFLAGS) mmdbsrv.o mmdbFF.o $(MMDBLIBS) mmdbsrv.PS: mmdbsrv.o mmdb_pubstruct.o PubStructAsn.o $(PURIFY) $(CC) -o $@ $(LDFLAGS) mmdbsrv.o mmdb_pubstruct.o PubStructAsn.o $(PSLIBS) $(MMDBLIBS) mmdbsrv.compile: prolog mmdbsrv.$(RMODE) mmdbsrv.install: mmdbsrv.compile web ./make-tool.sh --install mmdbsrv.$(RMODE) $(webdir) $(mode) MMDBTST=./make-tool.sh --test $(webdir) mmdbsrv.$(RMODE) $(mode) mmdbsrv.test: mmdbsrv.install $(MMDBTST) 'uid=1' $(MMDBTST) 'uid=1144&form=6&db=t&Dopt=s' $(MMDBTST) 'uid=1144' $(MMDBTST) 'uid=9524&form=6&db=t&save=See&dopt=k&Complexity=Cn3D+Subset&KinemageColor=Molecule+Number&KinemageRender=63' $(MMDBTST) 'uid=1042&form=6&db=t&save=&dopt=j&Complexity=Cn3D+Subset&KinemageColor=Molecule+Number&KinemageRender=63' $(MMDBTST) 'uid=9660' # # VASTSRV # VAST_OBJ= vastsrv.o vastlocl.o vast2mage.o vast2pdb.o vast2cn3d.o vastsubs.o \ vastchkid.o mkbioseq_vs.o mkbioseqA.o mkbioseqB.o vastsrv.FF: $(VAST_OBJ) mmdbFF.o $(PURIFY) $(CC) -o $@ $(LDFLAGS) $(VAST_OBJ) mmdbFF.o -lncbiwww -lncbimsc1 $(MMDBLIBS) vastsrv.PS: $(VAST_OBJ) mmdb_pubstruct.o PubStructAsn.o $(PURIFY) $(CC) -o $@ $(LDFLAGS) $(VAST_OBJ) mmdb_pubstruct.o PubStructAsn.o $(PSLIBS) -lncbiwww -lncbimsc1 $(MMDBLIBS) vastsrv.compile: prolog vastsrv.$(RMODE) vastsrv.install: vastsrv.compile ./make-tool.sh --install vastsrv.$(RMODE) $(webdir) $(mode) VASTTST=./make-tool.sh --test $(webdir) vastsrv.$(RMODE) $(mode) vastsrv.test: vastsrv.install $(VASTTST) 'uid=8100&chaindom=81000100' $(VASTTST) 'uid=1001&chaindom=10010100' $(VASTTST) 'uid=1001&chaindom=10010100&action=0&calltype=a&chn_complexity=1&atm_complexity=1&hit=954102001' $(VASTTST) 'uid=4107&chaindom=41070100&action=0&calltype=a&chn_complexity=1&atm_complexity=1&hit=708402001' $(VASTTST) 'uid=6104&chaindom=61040100&action=0&calltype=a&chn_complexity=1&atm_complexity=1&hit=929101001' $(VASTTST) 'uid=8063&chaindom=80630100&action=0&calltype=a&chn_complexity=1&atm_complexity=1&hit=912701001' # # PubStruct Loader # LOADLIBS= -lnlmzip -lctutils $(SYBLIBRARY) -lncbimmdb -lncbiobj -lncbi $(NCBI_OTHERLIBS) loader : loader.o PubStructAsn.o $(PURIFY) $(CC) -o $@ $(LDFLAGS) loader.o PubStructAsn.o $(LOADLIBS) loader.compile : prolog loader loader.install: loader.compile loader_check.sh index/st_configure.sh PubStruct_control.sh @[ -d $(loaddir) ] || ( \ if [ x$(loaddir) = xbin ] ; \ then mkdir bin ; \ else \ echo "Error: util tool installation failed - target directory <$(loaddir)> doesn't exist"; exit 1 ; \ fi ) cp loader $(loaddir)/st_loader cp index/st_configure.sh $(loaddir) cp PubStruct_control.sh loader_check.sh $(loaddir) chmod a+x $(loaddir)/st_configure.sh $(loaddir)/PubStruct_control.sh [ ! -f $(loaddir)/.syb_set ] || ( cd $(loaddir) ; rm -rf .syb_set ) SYBASE=$(NCBI_SYBASE) ; export SYBASE ; cd $(loaddir) ; ./st_configure.sh loader.test: loader.install [ ! -d mmdb_test ] || rm -rf mmdb_test mkdir mmdb_test cp /net/vaster/mmdb/mmdb/data/1.val.gz mmdb_test echo 1 >.testset dsql -S MOZART_SYS10 -U kimelman -P kmlmNu