#ifndef _objmmdb1_ #define _objmmdb1_ #undef NLM_EXTERN #ifdef NLM_IMPORT #define NLM_EXTERN NLM_IMPORT #else #define NLM_EXTERN extern #endif #ifdef __cplusplus extern "C" { /* } */ #endif /************************************************** * * Generated objects for Module MMDB * Generated using ASNCODE Revision: 4.2 at Aug 1, 1996 4:27 PM * **************************************************/ NLM_EXTERN Boolean LIBCALL objmmdb1AsnLoad PROTO((void)); /************************************************** * * Biostruc * **************************************************/ typedef struct struct_Biostruc { struct struct_Biostruc PNTR next; Uint4 OBbits__; ValNodePtr id; ValNodePtr descr; struct struct_Biostruc_graph PNTR chemical_graph; struct struct_Biostruc_feature_set PNTR features; struct struct_Biostruc_model PNTR model; } Biostruc, PNTR BiostrucPtr; NLM_EXTERN BiostrucPtr LIBCALL BiostrucFree PROTO ((BiostrucPtr )); BiostrucPtr LIBCALL BiostrucNew PROTO (( void )); NLM_EXTERN BiostrucPtr LIBCALL BiostrucAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); NLM_EXTERN Boolean LIBCALL BiostrucAsnWrite PROTO (( BiostrucPtr , AsnIoPtr, AsnTypePtr)); typedef ValNodePtr BiostrucIdPtr; typedef ValNode BiostrucId; #define BiostrucId_mmdb_id 1 #define BiostrucId_other_database 2 #define BiostrucId_local_id 3 BiostrucIdPtr LIBCALL BiostrucIdFree PROTO ((BiostrucIdPtr )); BiostrucIdPtr LIBCALL BiostrucIdAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); Boolean LIBCALL BiostrucIdAsnWrite PROTO (( BiostrucIdPtr , AsnIoPtr, AsnTypePtr)); /************************************************** * * BiostrucSet * **************************************************/ typedef struct struct_Biostruc_set { Uint4 OBbits__; ValNodePtr id; ValNodePtr descr; struct struct_Biostruc PNTR biostrucs; } BiostrucSet, PNTR BiostrucSetPtr; BiostrucSetPtr LIBCALL BiostrucSetFree PROTO ((BiostrucSetPtr )); BiostrucSetPtr LIBCALL BiostrucSetNew PROTO (( void )); BiostrucSetPtr LIBCALL BiostrucSetAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); Boolean LIBCALL BiostrucSetAsnWrite PROTO (( BiostrucSetPtr , AsnIoPtr, AsnTypePtr)); /************************************************** * * BiostrucAnnotSet * **************************************************/ typedef struct struct_Biostruc_annot_set { Uint4 OBbits__; ValNodePtr id; ValNodePtr descr; struct struct_Biostruc_feature_set PNTR features; } BiostrucAnnotSet, PNTR BiostrucAnnotSetPtr; NLM_EXTERN BiostrucAnnotSetPtr LIBCALL BiostrucAnnotSetFree PROTO ((BiostrucAnnotSetPtr )); NLM_EXTERN BiostrucAnnotSetPtr LIBCALL BiostrucAnnotSetNew PROTO (( void )); NLM_EXTERN BiostrucAnnotSetPtr LIBCALL BiostrucAnnotSetAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); NLM_EXTERN Boolean LIBCALL BiostrucAnnotSetAsnWrite PROTO (( BiostrucAnnotSetPtr , AsnIoPtr, AsnTypePtr)); /************************************************** * * BiostrucResidueGraphSet * **************************************************/ typedef struct struct_Biostruc_residue_graph_set { Uint4 OBbits__; ValNodePtr id; ValNodePtr descr; struct struct_Residue_graph PNTR residue_graphs; } BiostrucResidueGraphSet, PNTR BiostrucResidueGraphSetPtr; NLM_EXTERN BiostrucResidueGraphSetPtr LIBCALL BiostrucResidueGraphSetFree PROTO ((BiostrucResidueGraphSetPtr )); BiostrucResidueGraphSetPtr LIBCALL BiostrucResidueGraphSetNew PROTO (( void )); BiostrucResidueGraphSetPtr LIBCALL BiostrucResidueGraphSetAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); Boolean LIBCALL BiostrucResidueGraphSetAsnWrite PROTO (( BiostrucResidueGraphSetPtr , AsnIoPtr, AsnTypePtr)); typedef ValNodePtr BiostrucDescrPtr; typedef ValNode BiostrucDescr; #define BiostrucDescr_name 1 #define BiostrucDescr_pdb_comment 2 #define BiostrucDescr_other_comment 3 #define BiostrucDescr_history 4 #define BiostrucDescr_attribution 5 BiostrucDescrPtr LIBCALL BiostrucDescrFree PROTO ((BiostrucDescrPtr )); BiostrucDescrPtr LIBCALL BiostrucDescrAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); Boolean LIBCALL BiostrucDescrAsnWrite PROTO (( BiostrucDescrPtr , AsnIoPtr, AsnTypePtr)); /************************************************** * * BiostrucHistory * **************************************************/ typedef struct struct_Biostruc_history { Uint4 OBbits__; struct struct_Biostruc_replace PNTR replaces; struct struct_Biostruc_replace PNTR replaced_by; struct struct_Biostruc_source PNTR data_source; } BiostrucHistory, PNTR BiostrucHistoryPtr; BiostrucHistoryPtr LIBCALL BiostrucHistoryFree PROTO ((BiostrucHistoryPtr )); BiostrucHistoryPtr LIBCALL BiostrucHistoryNew PROTO (( void )); BiostrucHistoryPtr LIBCALL BiostrucHistoryAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); Boolean LIBCALL BiostrucHistoryAsnWrite PROTO (( BiostrucHistoryPtr , AsnIoPtr, AsnTypePtr)); /************************************************** * * BiostrucReplace * **************************************************/ typedef struct struct_Biostruc_replace { Uint4 OBbits__; ValNodePtr id; DatePtr date; } BiostrucReplace, PNTR BiostrucReplacePtr; BiostrucReplacePtr LIBCALL BiostrucReplaceFree PROTO ((BiostrucReplacePtr )); BiostrucReplacePtr LIBCALL BiostrucReplaceNew PROTO (( void )); BiostrucReplacePtr LIBCALL BiostrucReplaceAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); Boolean LIBCALL BiostrucReplaceAsnWrite PROTO (( BiostrucReplacePtr , AsnIoPtr, AsnTypePtr)); /************************************************** * * BiostrucSource * **************************************************/ typedef struct struct_Biostruc_source { Uint4 OBbits__; CharPtr name_of_database; ValNodePtr VersionOfDatabase_version_of_database; ValNodePtr database_entry_id; DatePtr database_entry_date; ValNodePtr database_entry_history; } BiostrucSource, PNTR BiostrucSourcePtr; BiostrucSourcePtr LIBCALL BiostrucSourceFree PROTO ((BiostrucSourcePtr )); BiostrucSourcePtr LIBCALL BiostrucSourceNew PROTO (( void )); BiostrucSourcePtr LIBCALL BiostrucSourceAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); Boolean LIBCALL BiostrucSourceAsnWrite PROTO (( BiostrucSourcePtr , AsnIoPtr, AsnTypePtr)); #ifdef NLM_GENERATED_CODE_PROTO typedef ValNodePtr VersionOfDatabase_version_of_databasePtr; typedef ValNode VersionOfDatabase_version_of_database; #endif /* NLM_GENERATED_CODE_PROTO */ #define VersionOfDatabase_version_of_database_release_date 1 #define VersionOfDatabase_version_of_database_release_code 2 #ifdef NLM_GENERATED_CODE_PROTO static VersionOfDatabase_version_of_databasePtr LIBCALL VersionOfDatabase_version_of_databaseFree PROTO ((VersionOfDatabase_version_of_databasePtr )); static VersionOfDatabase_version_of_databasePtr LIBCALL VersionOfDatabase_version_of_databaseAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); static Boolean LIBCALL VersionOfDatabase_version_of_databaseAsnWrite PROTO (( VersionOfDatabase_version_of_databasePtr , AsnIoPtr, AsnTypePtr)); #endif /* NLM_GENERATED_CODE_PROTO */ /************************************************** * * Generated objects for Module MMDB-Chemical-graph * Generated using ASNCODE Revision: 4.2 at Aug 1, 1996 4:27 PM * **************************************************/ /************************************************** * * BiostrucGraph * **************************************************/ typedef struct struct_Biostruc_graph { Uint4 OBbits__; ValNodePtr descr; struct struct_Molecule_graph PNTR molecule_graphs; struct struct_Inter_residue_bond PNTR inter_molecule_bonds; struct struct_Residue_graph PNTR residue_graphs; } BiostrucGraph, PNTR BiostrucGraphPtr; BiostrucGraphPtr LIBCALL BiostrucGraphFree PROTO ((BiostrucGraphPtr )); BiostrucGraphPtr LIBCALL BiostrucGraphNew PROTO (( void )); BiostrucGraphPtr LIBCALL BiostrucGraphAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); Boolean LIBCALL BiostrucGraphAsnWrite PROTO (( BiostrucGraphPtr , AsnIoPtr, AsnTypePtr)); typedef ValNodePtr BiomolDescrPtr; typedef ValNode BiomolDescr; #define BiomolDescr_name 1 #define BiomolDescr_pdb_class 2 #define BiomolDescr_pdb_source 3 #define BiomolDescr_pdb_comment 4 #define BiomolDescr_other_comment 5 #define BiomolDescr_organism 6 #define BiomolDescr_attribution 7 #define BiomolDescr_assembly_type 8 #define BiomolDescr_molecule_type 9 BiomolDescrPtr LIBCALL BiomolDescrFree PROTO ((BiomolDescrPtr )); BiomolDescrPtr LIBCALL BiomolDescrAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); Boolean LIBCALL BiomolDescrAsnWrite PROTO (( BiomolDescrPtr , AsnIoPtr, AsnTypePtr)); /************************************************** * * ResidueGraph * **************************************************/ typedef struct struct_Residue_graph { struct struct_Residue_graph PNTR next; Uint4 OBbits__; Int4 id; ValNodePtr descr; #define OB__Residue_graph_residue_type 0 Int4 residue_type; ValNodePtr iupac_code; struct struct_Atom PNTR atoms; struct struct_Intra_residue_bond PNTR bonds; struct struct_Chiral_center PNTR chiral_centers; } ResidueGraph, PNTR ResidueGraphPtr; ResidueGraphPtr LIBCALL ResidueGraphFree PROTO ((ResidueGraphPtr )); ResidueGraphPtr LIBCALL ResidueGraphNew PROTO (( void )); ResidueGraphPtr LIBCALL ResidueGraphAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); Boolean LIBCALL ResidueGraphAsnWrite PROTO (( ResidueGraphPtr , AsnIoPtr, AsnTypePtr)); /************************************************** * * MoleculeGraph * **************************************************/ typedef struct struct_Molecule_graph { struct struct_Molecule_graph PNTR next; Uint4 OBbits__; Int4 id; ValNodePtr descr; ValNodePtr seq_id; struct struct_Residue PNTR residue_sequence; struct struct_Inter_residue_bond PNTR inter_residue_bonds; } MoleculeGraph, PNTR MoleculeGraphPtr; MoleculeGraphPtr LIBCALL MoleculeGraphFree PROTO ((MoleculeGraphPtr )); MoleculeGraphPtr LIBCALL MoleculeGraphNew PROTO (( void )); MoleculeGraphPtr LIBCALL MoleculeGraphAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); Boolean LIBCALL MoleculeGraphAsnWrite PROTO (( MoleculeGraphPtr , AsnIoPtr, AsnTypePtr)); /************************************************** * * InterResidueBond * **************************************************/ typedef struct struct_Inter_residue_bond { struct struct_Inter_residue_bond PNTR next; Uint4 OBbits__; struct struct_Atom_pntr PNTR atom_id_1; struct struct_Atom_pntr PNTR atom_id_2; #define OB__Inter_residue_bond_bond_order 0 Int4 bond_order; } InterResidueBond, PNTR InterResidueBondPtr; InterResidueBondPtr LIBCALL InterResidueBondFree PROTO ((InterResidueBondPtr )); InterResidueBondPtr LIBCALL InterResidueBondNew PROTO (( void )); InterResidueBondPtr LIBCALL InterResidueBondAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); Boolean LIBCALL InterResidueBondAsnWrite PROTO (( InterResidueBondPtr , AsnIoPtr, AsnTypePtr)); /************************************************** * * Residue * **************************************************/ typedef struct struct_Residue { struct struct_Residue PNTR next; Uint4 OBbits__; Int4 id; CharPtr name; ValNodePtr residue_graph; } Residue, PNTR ResiduePtr; ResiduePtr LIBCALL ResidueFree PROTO ((ResiduePtr )); ResiduePtr LIBCALL ResidueNew PROTO (( void )); ResiduePtr LIBCALL ResidueAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); Boolean LIBCALL ResidueAsnWrite PROTO (( ResiduePtr , AsnIoPtr, AsnTypePtr)); typedef ValNodePtr ResidueGraphPntrPtr; typedef ValNode ResidueGraphPntr; #define ResidueGraphPntr_local 1 #define ResidueGraphPntr_biostruc 2 #define ResidueGraphPntr_standard 3 ResidueGraphPntrPtr LIBCALL ResidueGraphPntrFree PROTO ((ResidueGraphPntrPtr )); ResidueGraphPntrPtr LIBCALL ResidueGraphPntrAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); Boolean LIBCALL ResidueGraphPntrAsnWrite PROTO (( ResidueGraphPntrPtr , AsnIoPtr, AsnTypePtr)); /************************************************** * * BiostrucGraphPntr * **************************************************/ typedef struct struct_Biostruc_graph_pntr { Uint4 OBbits__; ValNodePtr biostruc_id; Int4 residue_graph_id; } BiostrucGraphPntr, PNTR BiostrucGraphPntrPtr; BiostrucGraphPntrPtr LIBCALL BiostrucGraphPntrFree PROTO ((BiostrucGraphPntrPtr )); BiostrucGraphPntrPtr LIBCALL BiostrucGraphPntrNew PROTO (( void )); BiostrucGraphPntrPtr LIBCALL BiostrucGraphPntrAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); Boolean LIBCALL BiostrucGraphPntrAsnWrite PROTO (( BiostrucGraphPntrPtr , AsnIoPtr, AsnTypePtr)); /************************************************** * * BiostrucResidueGraphSetPntr * **************************************************/ typedef struct struct_Biostruc_residue_graph_set_pntr { Uint4 OBbits__; ValNodePtr biostruc_residue_graph_set_id; Int4 residue_graph_id; } BiostrucResidueGraphSetPntr, PNTR BiostrucResidueGraphSetPntrPtr; BiostrucResidueGraphSetPntrPtr LIBCALL BiostrucResidueGraphSetPntrFree PROTO ((BiostrucResidueGraphSetPntrPtr )); BiostrucResidueGraphSetPntrPtr LIBCALL BiostrucResidueGraphSetPntrNew PROTO (( void )); BiostrucResidueGraphSetPntrPtr LIBCALL BiostrucResidueGraphSetPntrAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); Boolean LIBCALL BiostrucResidueGraphSetPntrAsnWrite PROTO (( BiostrucResidueGraphSetPntrPtr , AsnIoPtr, AsnTypePtr)); /************************************************** * * Atom * **************************************************/ typedef struct struct_Atom { struct struct_Atom PNTR next; Uint4 OBbits__; Int4 id; CharPtr name; ValNodePtr iupac_code; Uint2 element; /* following #defines are for enumerated type, not used by object loaders */ #define Atom_element_h 1 #define Atom_element_he 2 #define Atom_element_li 3 #define Atom_element_be 4 #define Atom_element_b 5 #define Atom_element_c 6 #define Atom_element_n 7 #define Atom_element_o 8 #define Atom_element_f 9 #define Atom_element_ne 10 #define Atom_element_na 11 #define Atom_element_mg 12 #define Atom_element_al 13 #define Atom_element_si 14 #define Atom_element_p 15 #define Atom_element_s 16 #define Atom_element_cl 17 #define Atom_element_ar 18 #define Atom_element_k 19 #define Atom_element_ca 20 #define Atom_element_sc 21 #define Atom_element_ti 22 #define Atom_element_v 23 #define Atom_element_cr 24 #define Atom_element_mn 25 #define Atom_element_fe 26 #define Atom_element_co 27 #define Atom_element_ni 28 #define Atom_element_cu 29 #define Atom_element_zn 30 #define Atom_element_ga 31 #define Atom_element_ge 32 #define Atom_element_as 33 #define Atom_element_se 34 #define Atom_element_br 35 #define Atom_element_kr 36 #define Atom_element_rb 37 #define Atom_element_sr 38 #define Atom_element_y 39 #define Atom_element_zr 40 #define Atom_element_nb 41 #define Atom_element_mo 42 #define Atom_element_tc 43 #define Atom_element_ru 44 #define Atom_element_rh 45 #define Atom_element_pd 46 #define Atom_element_ag 47 #define Atom_element_cd 48 #define Atom_element_in 49 #define Atom_element_sn 50 #define Atom_element_sb 51 #define Atom_element_te 52 #define Atom_element_i 53 #define Atom_element_xe 54 #define Atom_element_cs 55 #define Atom_element_ba 56 #define Atom_element_la 57 #define Atom_element_ce 58 #define Atom_element_pr 59 #define Atom_element_nd 60 #define Atom_element_pm 61 #define Atom_element_sm 62 #define Atom_element_eu 63 #define Atom_element_gd 64 #define Atom_element_tb 65 #define Atom_element_dy 66 #define Atom_element_ho 67 #define Atom_element_er 68 #define Atom_element_tm 69 #define Atom_element_yb 70 #define Atom_element_lu 71 #define Atom_element_hf 72 #define Atom_element_ta 73 #define Atom_element_w 74 #define Atom_element_re 75 #define Atom_element_os 76 #define Atom_element_ir 77 #define Atom_element_pt 78 #define Atom_element_au 79 #define Atom_element_hg 80 #define Atom_element_tl 81 #define Atom_element_pb 82 #define Atom_element_bi 83 #define Atom_element_po 84 #define Atom_element_at 85 #define Atom_element_rn 86 #define Atom_element_fr 87 #define Atom_element_ra 88 #define Atom_element_ac 89 #define Atom_element_th 90 #define Atom_element_pa 91 #define Atom_element_u 92 #define Atom_element_np 93 #define Atom_element_pu 94 #define Atom_element_am 95 #define Atom_element_cm 96 #define Atom_element_bk 97 #define Atom_element_cf 98 #define Atom_element_es 99 #define Atom_element_fm 100 #define Atom_element_md 101 #define Atom_element_no 102 #define Atom_element_lr 103 #define Atom_element_other 254 #define Atom_element_unknown 255 #define OB__Atom_ionizable_proton 0 Uint2 ionizable_proton; /* following #defines are for enumerated type, not used by object loaders */ #define Atom_ionizable_proton_true 1 #define Atom_ionizable_proton_false 2 #define Atom_ionizable_proton_unknown 255 } Atom, PNTR AtomPtr; AtomPtr LIBCALL AtomFree PROTO ((AtomPtr )); AtomPtr LIBCALL AtomNew PROTO (( void )); AtomPtr LIBCALL AtomAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); Boolean LIBCALL AtomAsnWrite PROTO (( AtomPtr , AsnIoPtr, AsnTypePtr)); /************************************************** * * IntraResidueBond * **************************************************/ typedef struct struct_Intra_residue_bond { struct struct_Intra_residue_bond PNTR next; Uint4 OBbits__; Int4 atom_id_1; Int4 atom_id_2; #define OB__Intra_residue_bond_bond_order 0 Int4 bond_order; } IntraResidueBond, PNTR IntraResidueBondPtr; IntraResidueBondPtr LIBCALL IntraResidueBondFree PROTO ((IntraResidueBondPtr )); IntraResidueBondPtr LIBCALL IntraResidueBondNew PROTO (( void )); IntraResidueBondPtr LIBCALL IntraResidueBondAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); Boolean LIBCALL IntraResidueBondAsnWrite PROTO (( IntraResidueBondPtr , AsnIoPtr, AsnTypePtr)); /************************************************** * * ChiralCenter * **************************************************/ typedef struct struct_Chiral_center { struct struct_Chiral_center PNTR next; Uint4 OBbits__; Int4 c; Int4 n1; Int4 n2; Int4 n3; Uint2 sign; /* following #defines are for enumerated type, not used by object loaders */ #define Chiral_center_sign_positive 1 #define Chiral_center_sign_negative 2 } ChiralCenter, PNTR ChiralCenterPtr; ChiralCenterPtr LIBCALL ChiralCenterFree PROTO ((ChiralCenterPtr )); ChiralCenterPtr LIBCALL ChiralCenterNew PROTO (( void )); ChiralCenterPtr LIBCALL ChiralCenterAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); Boolean LIBCALL ChiralCenterAsnWrite PROTO (( ChiralCenterPtr , AsnIoPtr, AsnTypePtr)); /************************************************** * * AtomPntr * **************************************************/ typedef struct struct_Atom_pntr { struct struct_Atom_pntr PNTR next; Uint4 OBbits__; Int4 molecule_id; Int4 residue_id; Int4 atom_id; } AtomPntr, PNTR AtomPntrPtr; AtomPntrPtr LIBCALL AtomPntrFree PROTO ((AtomPntrPtr )); AtomPntrPtr LIBCALL AtomPntrNew PROTO (( void )); AtomPntrPtr LIBCALL AtomPntrAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); Boolean LIBCALL AtomPntrAsnWrite PROTO (( AtomPntrPtr , AsnIoPtr, AsnTypePtr)); /************************************************** * * AtomPntrSet * **************************************************/ typedef struct struct_AtomPntr AtomPntrSet; typedef struct struct_AtomPntr PNTR AtomPntrSetPtr; #define AtomPntrSetNew() AtomPntrNew() #ifdef NLM_GENERATED_CODE_PROTO AtomPntrSetPtr LIBCALL AtomPntrSetFree PROTO ((AtomPntrSetPtr )); AtomPntrSetPtr LIBCALL AtomPntrSetNew PROTO (( void )); AtomPntrSetPtr LIBCALL AtomPntrSetAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); Boolean LIBCALL AtomPntrSetAsnWrite PROTO (( AtomPntrSetPtr , AsnIoPtr, AsnTypePtr)); #endif /* NLM_GENERATED_CODE_PROTO */ #ifdef __cplusplus /* { */ } #endif #undef NLM_EXTERN #ifdef NLM_EXPORT #define NLM_EXTERN NLM_EXPORT #else #define NLM_EXTERN #endif #endif /* _objmmdb1_ */