/* undviewer.h * =========================================================================== * * PUBLIC DOMAIN NOTICE * National Center for Biotechnology Information (NCBI) * * This software/database is a "United States Government Work" under the * terms of the United States Copyright Act. It was written as part of * the author's official duties as a United States Government employee and * thus cannot be copyrighted. This software/database is freely available * to the public for use. The National Library of Medicine and the U.S. * Government do not place any restriction on its use or reproduction. * We would, however, appreciate having the NCBI and the author cited in * any work or product based on this material * * Although all reasonable efforts have been taken to ensure the accuracy * and reliability of the software and data, the NLM and the U.S. * Government do not and cannot warrant the performance or results that * may be obtained by using this software or data. The NLM and the U.S. * Government disclaim all warranties, express or implied, including * warranties of performance, merchantability or fitness for any particular * purpose. * * =========================================================================== * * File Name: undviewer.h * * Author: Patrick Durand * * Version Creation Date: 5/3/99 * * $Revision: 6.57 $ * * File Description: * * Modifications: * -------------------------------------------------------------------------- * $Log: udviewer.h,v $ * Revision 6.57 2000/07/12 15:38:08 hurwitz * made rectangle select much faster. it's almost working. * * Revision 6.56 2000/07/08 20:44:01 vakatov * Get all "#include" out of the 'extern "C" { }' scope; other cleanup... * * Revision 6.55 2000/06/27 20:46:38 hurwitz * fixed bugs with select rectangle, added select row option * * Revision 6.54 2000/06/26 19:32:17 hurwitz * can select a rectangle instead of a single row, auto horizontal scroll works but not vertical scroll yet * * Revision 6.53 2000/06/16 14:57:02 lewisg * move entrez calls out of desktop * * Revision 6.52 2000/05/19 13:48:31 hurwitz * made a version of DDE that doesn't allow aligned gaps, changed wording for adding new rows * * Revision 6.51 2000/05/15 23:39:34 lewisg * shred cblast, add menu items for gapped/ungapped, fix pdbheaders * * Revision 6.50 2000/04/28 13:51:20 kans * db_list is a PopuP, not a scrolling LisT * * Revision 6.49 2000/04/27 22:21:58 lewisg * misc bugs/features * * Revision 6.48 2000/04/27 19:47:31 kans * implemented udv reset and select (PD+JK) * * Revision 6.47 2000/04/13 13:58:03 durand * allowed udv to display reverse complement sequence * * Revision 6.46 2000/04/11 13:19:26 durand * added UDV_LoadSpecificEditor for Sequin * * Revision 6.45 2000/04/10 21:41:26 lewisg * move alignment menus into ddv, udv from cn3d * * Revision 6.44 2000/04/10 20:33:40 lewisg * fix show/hide for blast multiple, make blast multiple API generic * * Revision 6.43 2000/04/05 21:13:20 kans * more changes to allow udv panel to be added to Sequin viewer * * Revision 6.42 2000/04/05 20:52:36 hurwitz * added GUI control for shifting left and right alignment boundaries * * Revision 6.41 2000/04/03 22:26:32 hurwitz * can now shift a row with click and drag * * Revision 6.40 2000/03/31 13:51:21 durand * added UDV_InitForSequin() * * Revision 6.39 2000/03/30 19:54:09 kans * initial work to get UDV and DDV into Sequin viewer * * Revision 6.38 2000/03/28 21:03:14 hurwitz * added gui control to re-order rows * * Revision 6.37 2000/03/15 19:32:20 lewisg * launch only single udv window * * Revision 6.36 2000/03/06 14:00:47 durand * first release of the Summary viewer done * * Revision 6.35 2000/03/02 15:41:46 lewisg * move StartNetworkProc typedef to samutil.h * * Revision 6.34 2000/03/01 22:49:41 lewisg * import bioseq, neatlyindex, get rid of dead code * * Revision 6.33 2000/02/16 22:38:30 durand * fixed some wierd behaviours of features selections * * Revision 6.32 2000/02/16 16:00:33 durand * added UDVprocid and GVprocid to vmp data structure * * Revision 6.31 2000/02/15 22:40:58 lewisg * add ability to launch udv so that it colors by row, fixes to colormgr, track rows from viewmgr, fix visual c projects * * Revision 6.30 2000/01/11 15:03:18 durand * remove network stuff * * Revision 6.29 2000/01/10 15:18:40 durand * use Entrez instead of ID1 * * Revision 6.28 2000/01/05 21:06:38 durand * update mouse click actions and DrawSequence function for a better use from ddv and cn3d * * Revision 6.27 2000/01/03 21:06:38 durand * update the way the udv main window is created * * Revision 6.26 1999/12/03 23:17:23 lewisg * Patrick's new global update msg, argument passing when launching ddv, experimental editing * * Revision 6.25 1999/11/29 15:17:55 durand * designed a new GUI; fixed problems under Win95 and Linux * * Revision 6.24 1999/11/19 15:01:47 durand * speed up mouse selection ; avoid sequence flashing during selection ; update menu functionalities * * Revision 6.23 1999/11/18 14:54:23 durand * add a new function to create an image map given a ParaG structure - Entrez sequence viewer only * * Revision 6.22 1999/11/09 21:06:58 durand * add sequence selection manager * * Revision 6.21 1999/10/21 13:00:33 durand * add new fields in UDV_mouse_select struct * * Revision 6.20 1999/10/20 20:07:44 durand * add first_row and first_col to UDV_mouse_select * * Revision 6.19 1999/10/02 15:11:16 durand * update the code to be used by wwwudv * * Revision 6.18 1999/09/29 20:09:51 durand * modify some parts of the code to be used by the cgi-bin release of UDV * * Revision 6.17 1999/09/22 14:26:50 durand * add fields for DDV mouse management * * Revision 6.16 1999/09/20 21:57:41 durand * switch UDV_draw_double_cursor from static to NLM_EXTERN * * Revision 6.15 1999/09/08 15:36:58 beloslyu * Typo fixed * * Revision 6.14 1999/09/08 14:09:32 durand * update UDV_Draw_scale to deal with discontinuous SEqAlign * * Revision 6.13 1999/07/30 20:08:56 durand * updates for the new Entrez graphical viewer * * Revision 6.12 1999/07/19 20:35:36 durand * switch ScalePositionfrom from Boolean to Uint1 in UDV_Draw_scale * * Revision 6.11 1999/07/09 13:56:56 durand * removed all the defines to udvdef.h * * Revision 6.10 1999/07/06 17:02:59 durand * add UDVPanelRegion structure for DDV * * Revision 6.9 1999/06/16 22:11:24 durand * update UDV functions to be used by DDV * * Revision 6.8 1999/06/16 13:07:00 durand * update UDV functions to be used by DDV * * Revision 6.7 1999/06/15 15:25:53 durand * remove DDV_win in UDVPanelData structure * * Revision 6.6 1999/06/08 13:52:36 durand * update UDV data structures for the MSA editor * ========================================================================== */ #ifndef _UNDVIEWER_ #define _UNDVIEWER_ /******************************************************************************* INCLUDE SECTION *******************************************************************************/ #include #include #include #include #include #include #include #include #include #include #include #include #include #include #include #include #include #include #undef NLM_EXTERN #ifdef NLM_IMPORT #define NLM_EXTERN NLM_IMPORT #else #define NLM_EXTERN extern #endif #ifdef __cplusplus extern "C" { #endif /******************************************************************************* The major elements of the single sequence viewer : window and paragraph *******************************************************************************/ /***************************************************************************** Structure of the UnDViewer area -Panel-------------------------------------------------- - | | | | | | Name | Scale area | | | | area | (if left | Sequence area | | | | scale) | (paragraph) | cyClient | | | | | | | | | | -------------------------------------------------------- - <-cxName-> <-cxLeftScale-> <-------------------------cxClient---------------------> *****************************************************************************/ /***************************************************************************** Structure of a ParaG : see module udvseq.h *****************************************************************************/ /******************************************************************************* DATA STRUCTURE SECTION *******************************************************************************/ typedef struct udvscaledata { Uint4 ScaleColor; /*letter color*/ Uint4 TickMajColor; /*tick color*/ Uint4 TickMinColor; /*tick color*/ Boolean ShowMajorTick; /*display tick marks if TRUE*/ Boolean ShowMMinorTick; /*display tick marks if TRUE*/ Int2 ScalePosition; /*position of the scale, see #define above*/ Int2 cxLeftScale; /*width of the 'SCALE_POS_LEFT' area, pixel unit NULL if ScalePosition== _TOP or if ShowScale==FALSE*/ Int2 MajorTickEvery; /*put a major tick every*/ Int2 MinorTickEvery; /*put a minor tick every*/ } UDVScaleData, PNTR UDVScaleDataPtr; typedef struct udvletterlayout { Uint4 LetClr; /*color of a letter*/ Uint4 bkClr; /*bk color of a letter*/ Uint1 AspLet; /*aspect (uppercase,...)*/ } UDVLetterLayout, PNTR UDVLetterLayoutPtr; typedef struct udvfontdata { FonT hFnt; /*Current Font*/ Boolean UseDefaultColorLetter; /*if true, use the following color for letter (NA or AA); draft mode*/ Uint4 LetterColor; Int2 cxChar; /*width of a char, pixel unit*/ Int2 cyChar; /*height of a char, pixel unit*/ Int2 LineHeight; /*height of a single data line*/ Int2 ColWidth;/*width of a single data column-MSA only*/ } UDVFontData, PNTR UDVFontDataPtr; /*the following structure was added for DDV. It's here (and not in the code of DDV), because that struct is part of UDVPanelData*/ typedef struct udvpanelregion{/*descriptor of panel regions : ruler, names list, ParaG region, etc.*/ RecT region;/*size of the region*/ Uint1 type; /*type of the region; see above*/ } UDVPanelRegion, PNTR UDVPanelRegionPtr; typedef struct udvpaneldata { ValNodePtr region;/*descriptor of the panel content; each region->data.ptrvalue contains a pointer to UDVPanelRegion*/ Int4 nTotLines; /*total number of line to display*/ Int4 nTotCol;/*total number of column to display-MSA only*/ /*Display options*/ Boolean ShowFeatures; /*TRUE: show features*/ Boolean ShowScale; /*TRUE: show num. scale*/ Boolean ShowByBlock;/*TRUE: use nBlockByLine -MSA only*/ /*panel size*/ Int2 cxClient; /*width of the client panel area, pixel unit*/ Int2 cyClient; /*height of the client panel area, pixel unit*/ Int2 cxName; /*width of the 'Name' area, pixel unit*/ Int2 cyScale; /*height of the 'Sacle' area, pixel unit (MSA only)*/ /*Letter lines*/ Int2 nCharByLine; /*number of letter displayed on one line of the viewer*/ Int2 nBlockByLine; /*number Ten-letter blocks displayed on one line of the viewer*/ } UDVPanelData, PNTR UDVPanelDataPtr; typedef struct udvscrolldata { /*Scroll Bar*/ Int4 ScrollMax; /*Size of the vertical Scroll Bar*/ /*also equal number of data lines displayed within UnDViewer*/ Int4 ScrollPos; /*Current position within the vertical Scroll Bar*/ Int4 ScrollPage; /*Page decal of the vertical Scroll Bar*/ } UDVScrollData, PNTR UDVScrollDataPtr; typedef struct undviewergraphdata { UDVFontData udv_font; /*Font*/ UDVPanelData udv_panel; /*Panel*/ UDVScaleData udv_scale; /*Numerical scale*/ UDVScrollData udv_vscrl; /*vertical Scroll Bar*/ UDVScrollData udv_hscrl; /*horizontal Scroll Bar-MSA only*/ Uint4Ptr pClr; /*Color table for Features*/ Uint4 DisplayOptions;/*bits vector to encode display options*/ UDVLetterLayout NA_LayoutPal[5]; UDVLetterLayout AA_LayoutPal[26]; Int4 GotoLetter;/*letter to highlight after a GoTo action; one-based value*/ } UnDViewerGraphData, PNTR UnDViewerGraphDataPtr; typedef struct udv_item_select { Uint2 eIDsel; /*-| */ Uint2 iIDsel; /* |--selected item*/ Uint2 iTypeSel; /*-| */ } UDV_Item_Select, PNTR UDV_Item_SelectPtr; typedef struct udv_mouse_select { Int1 Action_type; /*action with the mouse*/ RecT rcClip; /*limit mvt of the mouse to this rc*/ PoinT oldPos; /*old pos of the mouse*/ PoinT newPos; /*new pos of the mouse*/ ParaGPtr pgp; /*current ParaG data*/ Char szPos[20]; /*current position within the bsp*/ Int4 old_row; /*used by DDV only (display coords); set when 'on_click' and every 'on_drag'*/ Int4 old_col; /* set when 'on_click' and every 'on_drag'*/ ParaGPtr old_pgp; /*pgp where old_col was located*/ Int4 first_row; /*set only when 'on_click'*/ Int4 first_col; /*set only when 'on_click'*/ Int4 last_row; /*save corner of rectangle*/ Int4 last_col; /*save corner of rectangle*/ Int4* first_cols; /*array for multiple rows*/ ParaGPtr first_pgp; /*pgp where first_col was located*/ ParaGPtr* first_pgps; /*array for multiple rows*/ PoinT first_point; /*point where first clicked*/ Int4 first_HScroll; /*horizontal scroll position when first clicked*/ Int4 first_VScroll; /*vertical scroll position when first clicked*/ Int4 old_HScroll; /*horizontal scroll when select rectangle last drawn */ Int4 old_VScroll; /*vertical scroll when select rectangle last drawn */ RecT outline; /*rectangle when making selection*/ } UDV_mouse_select,PNTR UDV_mouse_selectPtr; typedef struct scanfeat {/*use to scan feature when the user clicks on a feature*/ Uint2 eID; /*identity of the feature*/ Uint2 iID; Int4 index; /*position within the Feature List Box*/ } ScanFeat, PNTR ScanFeatPtr; typedef struct udvtimerdata {/*used with the UDV timer*/ Int4 pos;/*one-based; bsp coord*/ Int2 delay; Uint1 status; Uint1 action; }UDVTimerData, PNTR UDVTimerDataPtr; typedef struct viewerdialogdata { Uint2 procid; /*identification of ObjMgr User Data*/ Uint2 proctype; /* idem */ Uint2 userkey; /* idem */ BspInfo bsp_i; /*bsp information*/ UnDViewerGraphData udv_graph; /*UnDviewer graphical panel info*/ ValNodePtr ParaG; /*ParaG data of the entire display*/ PaneL UnDViewer; /*handle of the seq viewer panel*/ PrompT InfoPanel; /*handle of the info panel*/ WindoW Parent; /*only valid for Autonomous viewer*/ UDV_mouse_select UDV_ms; /*used for mouse manipulation*/ UDV_Item_Select Item_select;/*selected Item*/ UDV_Item_Select Old_Item_select;/*old selected Item*/ Boolean ClickFeatFromDlg;/*click from Feat List Dlg==TRUE*/ UDVTimerData udt; SAM_ViewGlobal *vgp; /*added for data exchange with Cn3D*/ BioseqViewPtr bvp; /*added for data exchange with Sequin*/ Boolean bDisplayRevComp;/*TRUE : diasplay the reverse complement of a sequence. Nuc. only.*/ } ViewerDialogData, PNTR ViewerDialogDataPtr; typedef struct udvmainmenu {/*handles of the main menu commands*/ MenU File; MenU Options; MenU Help; MenU Align; IteM FileOpen; /*open file command*/ IteM EntrezOpen; /*open from Entrez command*/ IteM FileClose; /*close file command*/ IteM ListSequence; /*list of available sequence*/ IteM QuitViewer; /*close the viewer*/ IteM ShowFeature; /*show feature on/off command*/ IteM ShowFeatureList; /*show feature on/off command*/ IteM SearchForFeature;/*search features by keyword*/ IteM ShowRevComp; /*show reverse complement (nuc. seq. only)*/ MenU ScalePos; /*scale position command*/ ChoicE ScalePosChoice; /*scale pos value (sub-menu)*/ IteM RefreshScreen; /*redraw the entire screen*/ MenU AddRow; MenU FromFile; MenU FromNet; IteM BlastMany; IteM ConfigNet;/*Entrez Network configuration*/ IteM HelpAbout; /*what's that ?*/ } UDVMainMenu, PNTR UDVMainMenuPtr; typedef struct udvlogodata { FonT f1; FonT f2; FonT f3; Char szTitle[25]; Char szDesc[80]; } UDVLogoData, PNTR UDVLogoDataPtr; typedef struct viewermain { Boolean UseNetwork;/*true if UDV is connected to Entrez*/ Uint2 UDVprocid; Uint2 GVprocid; /*main win menu*/ UDVMainMenu MainMenu; /*menu command list*/ /*Features List DlgBox*/ WindoW hFeatDlg; /*Panel component*/ ButtoN gotoBtn; TexT gotoVal; PaneL Logo_Panel; Boolean Show_logo; GrouP StatusGroup; /*viewer data used only when AutonomeViewer is TRUE */ Boolean AutonomeViewer; Pointer dataptr; /*identification of the object*/ Uint2 datatype; /*idem */ Uint2 entityID; /*idem */ ValNodePtr BspTable; /*list of bsp*/ Uint2 BspChoice; /*selection in menu (ONE-based)*/ WindoW hWndMain; /*BSP displayed in the viewer*/ ViewerDialogDataPtr vdp; } ViewerMain, PNTR ViewerMainPtr; #define REGISTER_UDV_AUTONOMOUS ObjMgrProcLoad(OMPROC_VIEW, \ "OneD-Viewer", "SingleSeqViewer", OBJ_BIOSEQ, 0, OBJ_BIOSEQ, 0, \ NULL, UDV_ObjRegAutonomous, 0) #define REGISTER_UDV_SEQENTRY ObjMgrProcLoad(OMPROC_VIEW, \ "OneD-Viewer SE", "SingleSeqViewer SE", OBJ_BIOSEQSET, 0, OBJ_BIOSEQSET, 0, \ NULL, UDV_ObjRegAutonomous, 0) /*struture passed to the FEAT List dialog box*/ typedef struct flmdata { WindoW hWndMain; /*UnDviewer*/ WindoW lbox; /*list of features (OwnerDraw Lbox)*/ GrouP gFeatClass; /*Hidden group of the Feat Class popup*/ PopuP pop; /*available class list*/ Int1Ptr SeqFeatClass;/*classes reported for a sequence*/ } FLMData, PNTR FLMDataPtr; /*use to initialize the Feature List Dialog box*/ typedef struct scanfeatforselect { Uint2 eID; /*if !=-1, UnDviewer slected feature*/ Uint2 iID; Int4 index; /*return the index of the UnDviewer slected feature*/ Int4 compteur;/*count the number of entries in Feature List DlgBox*/ WindoW lbox; /*the list itself*/ Boolean SeqFeatListAvail[SEQFEAT_MAX+1];/*use to retrieve the feature classes*/ Boolean SearchFeat; Char szKeyword[50]; } ScanFeatForSelect, PNTR ScanFeatForSelectPtr; /* * The UdvGlobalsPtr may be registered with a call to SetAppProperty * e.g., SetAppProperty ("UdvGlobals", &udvglobals), where udvglobals * is a persistent structure filled with Vibrant objects or callback * function pointers specific for a given application. */ typedef SeqEntryPtr (*UdvFetchSeqEntryProc) (Int4 uid, Int2 retcode); typedef struct udvglobals { ViewerMainPtr vmp; UdvFetchSeqEntryProc fetchSepProc; Nlm_ItmActnProc NetCfgMenuProc; StartNetworkProc NetStartProc; } UdvGlobals, PNTR UdvGlobalsPtr; /* * structs used only by the Blast sequence dialog box */ #if 0 struct _UDV_BlastDlgData; typedef void (*UDV_BlastProcCB)(struct _UDV_BlastDlgData *bddp); typedef struct _UDV_BlastDlgData { ValNode *pvnSips; /* list of sips in structure */ LisT bsp_list; /* listbox of bsps */ PopuP db_list; /* listbox of databases */ ButtoN bGap; /* should the alignment be gapped? */ TexT tMax; TexT tExpect; UDV_BlastProcCB callback; /* called at end of alignment */ Boolean IBM; /* should IBM be applied? */ SeqAlign *salp; /* resulting seqalign */ } UDV_BlastDlgData; #endif /* 0 */ /******************************************************************************* EXTERNAL FUNCTIONS SECTION (see the .c files of UnDViewer for a complete description of each function) *******************************************************************************/ /*drawing and UDV graphical management*/ NLM_EXTERN ValNodePtr UDV_GetSelectedRegions(SelStructPtr om_ssp, Uint2 bsp_eID, Uint2 bsp_iID); NLM_EXTERN Boolean UDV_IsLetterSelected(ValNodePtr vnp_bsp, Int4 bsp_pos, Int4 bspLength,Boolean bDisplayRevComp); NLM_EXTERN SeqLocPtr UDV_GetClosetSeqLocGivenBspPos(SeqIdPtr sip, Uint2 eID, Uint2 iID, Int4 bsp_pos, Int4Ptr old_pos, Boolean bModify); NLM_EXTERN void UDV_InvalRegion(PaneL UnDViewer,UnDViewerGraphDataPtr GrData, ParaGPtr pgp,Int4 start_inval,Int4 stop_inval,Boolean IsSelect); NLM_EXTERN void UDV_GetCurrentDispRange(ViewerDialogDataPtr vdp, Int4Ptr from_bsp,Int4Ptr to_bsp,Int4Ptr from_line,Int4Ptr to_line); NLM_EXTERN void LogoFontCreate(FonT PNTR f1,FonT PNTR f2,FonT PNTR f3); NLM_EXTERN FonT UDV_InitFont(UDVFontDataPtr udvfp); NLM_EXTERN Int2 UDV_ComputeLineHeight(Int2 cyChar); NLM_EXTERN void UDV_FontDim(Int2Ptr cxChar,Int2Ptr cyChar); NLM_EXTERN void UDV_ComputePanelSize(RecT rc,Int2Ptr cxClient, Int2Ptr cyClient); NLM_EXTERN void UDV_ComputeBlockByLine(Int2 cxClient,Int2 cxName, Int2 cxLeftScale,Int2 cxChar,Int2Ptr nCharByLine, Int2Ptr nBlockByLine); NLM_EXTERN void UDV_Build_Other_Colors(UnDViewerGraphDataPtr GrDataPtr); NLM_EXTERN void UDV_Init_ScaleData(UnDViewerGraphDataPtr GrDataPtr); NLM_EXTERN void UDV_Init_GraphData(PaneL p, UnDViewerGraphDataPtr GrDataPtr); NLM_EXTERN Uint4Ptr UDV_BuildFeatColorTable(void); NLM_EXTERN void UDV_Build_NA_LayoutPalette(UnDViewerGraphDataPtr GrData); NLM_EXTERN void UDV_Build_AA_LayoutPalette(UnDViewerGraphDataPtr GrData); NLM_EXTERN void UDV_deselect_feature(ViewerDialogDataPtr vdp); NLM_EXTERN void UDV_SelectFeatInFeatDlg(ViewerMainPtr vmp, Uint2 entityID, Uint2 itemID); NLM_EXTERN void UDV_select_feature(PaneL p,ViewerDialogDataPtr vdp, Uint2 entityID,Uint2 itemID,Boolean bRepos); NLM_EXTERN void UDV_draw_double_cursor(RecT rcClip,PoinT pos); NLM_EXTERN void UDV_draw_horizontal_line(RecT rcClip, Int4 VPos); NLM_EXTERN void UDV_draw_rectangle(RecT rcClip, Boolean DotIt); NLM_EXTERN void UDV_draw_vertical_bar(RecT rcClip, Int4 HPos, Boolean DotIt); NLM_EXTERN void UDV_draw_horizontal_bar(Int4 VPos, Int4 LeftHPos, Int4 RightHPos); NLM_EXTERN void UDV_ClickProc(PaneL p, PoinT pt); NLM_EXTERN void UDV_DragMouse(PaneL p,ViewerDialogDataPtr vdp, PoinT pt); NLM_EXTERN void UDV_DragProc(PaneL p, PoinT pt); NLM_EXTERN void UDV_ReleaseMouse(PaneL p,ViewerDialogDataPtr vdp, PoinT pt); NLM_EXTERN void UDV_ReleaseProc(PaneL p, PoinT pt); NLM_EXTERN void UDV_HoldProc(PaneL p, PoinT pt); NLM_EXTERN void UDV_Draw_features(UnDViewerGraphDataPtr GrData, BspInfoPtr bsp_i,Boolean UseDefClr,Uint4 DefClr, ParaGPtr pgp,RecT PNTR rc,Uint4Ptr pClr, UDV_Item_Select * is,UDV_Item_Select * old_is,Uint4 DisplayType); NLM_EXTERN Boolean UDV_Draw_features_MAP(UnDViewerGraphDataPtr GrData, BspInfoPtr bsp_i,ParaGPtr pgp,RecT PNTR rc,Uint2 entityID, ValNodePtr PNTR vnpp_map); NLM_EXTERN void UDV_Draw_sequence(UnDViewerGraphDataPtr GrData, DDV_ColorGlobal *svpp ,Boolean UseDefClr,Uint4 DefClr, ParaGPtr pgp,RecT PNTR rc,Int4 start_decal,Int4 StartLetter, CharPtr szSequence, SeqId *sip,ValNodePtr vnp_bsp,Boolean bSelect, Int4 Row,Int4 bspLength,Boolean bDisplayRevComp); NLM_EXTERN void UDV_Draw_scale(UnDViewerGraphDataPtr GrData, Boolean ShowMajorTick,Boolean ShowMMinorTick,Uint1 ScalePosition, Int4 StartLetter,Int4 StopLetter,RecT PNTR rc,Int2 LeftDecal, Int4 ScaleMaxVal,Int4 AlignPos,Boolean UseBlockDisp,Int2 ColWidth, Uint4 DisplayType); NLM_EXTERN void UDV_draw_viewer (PaneL p); NLM_EXTERN void UDV_Logo_onDraw (PaneL p); /*Features List Dialog Box*/ NLM_EXTERN Boolean LIBCALLBACK UDV_FeaturesListBoxFind (SeqFeatPtr sfp, SeqMgrFeatContextPtr context); /*UDV main window management*/ NLM_EXTERN Int2 LIBCALLBACK UDV_ObjRegAutonomous (Pointer data); NLM_EXTERN void UDV_WinMainCleanupExtraProc (GraphiC g, VoidPtr data); NLM_EXTERN void UDV_Resize_Logo_Panel (WindoW Parent,RecT PNTR rcL); NLM_EXTERN void * UDV_FreeVDPstruct(ViewerDialogDataPtr vdp,Boolean final); NLM_EXTERN void UDV_set_PullMenus(UDVMainMenuPtr mmp,Boolean enable); NLM_EXTERN void UDV_set_MainMenus(UDVMainMenuPtr mmp,Boolean enable); NLM_EXTERN void UDV_set_MainControls(ViewerMainPtr vmp,Boolean enable); NLM_EXTERN void UDV_SetupMenus(WindoW w,Boolean isEntrezOk,SAM_ViewGlobal *vgp); NLM_EXTERN void UDV_resize_viewer(PaneL p,ViewerDialogDataPtr vdp); NLM_EXTERN void UnDViewerVScrlUpdate(PaneL p,Boolean bInit,Int4 CurPos); NLM_EXTERN void UDV_WinMainResize(WindoW w); NLM_EXTERN Boolean UDV_init_bsp_forViewer(PaneL p,BioseqPtr bsp,Uint2 eID, Uint2 iID,Uint2 itype,ViewerDialogDataPtr vdp); NLM_EXTERN Boolean UDV_Init_NonAutonomous(PaneL p, ViewerDialogDataPtr PNTR vdp,FonT f); NLM_EXTERN Boolean CreateMainControls(WindoW w,ViewerMainPtr vmp,SAM_ViewGlobal *vgp); NLM_EXTERN void UnDViewerVScrlProc (BaR sb, SlatE s, Int4 newval, Int4 oldval); NLM_EXTERN void UDVResetProc (PaneL p); /*sequence buffer management*/ NLM_EXTERN CharPtr UDV_Read_Sequence (SeqIdPtr sip, Int4 from, Int4 to, Boolean IsProt,Int2 len); NLM_EXTERN void UDV_create_buffer(UnDViewerGraphDataPtr GrData, ValNodePtr ParaG_list,BspInfoPtr bsp_i,ValNodePtr StartScan, Boolean bReverse); /*open a SeqEntry management*/ NLM_EXTERN Boolean LIBCALLBACK SearchBioseq (BioseqPtr bsp, SeqMgrBioseqContextPtr context); NLM_EXTERN Boolean UDV_analyze_SEP_for_open(FILE *fp,SeqEntryPtr the_set, ViewerMainPtr vmp,WindoW w); NLM_EXTERN void UDV_Init_vdp_struct(PaneL p,ViewerDialogDataPtr vdp, Boolean EraseParaG,Boolean EraseMainTitle,Boolean EraseInfoPanel); NLM_EXTERN void UDV_NetOpen (IteM i); NLM_EXTERN void UDV_FileOpen(IteM i); NLM_EXTERN void UDV_FileClose(IteM i); NLM_EXTERN void UDV_CreateListBioseqDlg(IteM i); /*clean quit*/ NLM_EXTERN void UDV_WinMainProgQuit(WindoW w); /*Sequin stuffs*/ NLM_EXTERN Boolean UDV_InitForSequin(PaneL udvPanel, BioseqViewPtr bvp); NLM_EXTERN void UDV_LoadSpecificEditor(BioseqViewPtr bvp, Uint2 entityID, Uint2 itemID, Uint2 itemtype); /*zero UDV_mouse_select structure*/ NLM_EXTERN void ClearUDV_mouse_select(UDV_mouse_selectPtr msp); #if 0 /* blast dialog */ NLM_EXTERN void UDV_BlastDlg(UDV_BlastDlgData *bddp); #endif #ifdef __cplusplus } #endif #undef NLM_EXTERN #ifdef NLM_EXPORT #define NLM_EXTERN NLM_EXPORT #else #define NLM_EXTERN #endif #endif /* ndef _UNDVIEWER_ */