# makefile for demo programs # # $Id: makedemo.unx,v 6.59 2001/08/07 16:55:04 beloslyu Exp $ # # Sun with unbundled ANSI compiler [ make CC=acc ] # Sun with Gnu C [ make CC=gcc ] # Sun with Solaris 2.x OS [ make CC="cc -Xa" OTHERLIBS="-lthread -lm" ] # Silicon Graphics [ make OTHERLIBS="-lm -lPW -lsun" ] # IBM 3090 with AIX [ make ] # ULTRIX [ make ] # Apple AUX [ make SHELL=\usr\bin ] # NeXt [ make CFLAGS1="-c -ansi" ] # DEC Alpha under OSF/1 [ make CC=cc ] # # Subsequent makes should make ... nocopy instead of make ... all # to avoid recopying the include files # # To Make the Motif version of demos add: # VIBLIBS="-lXm -lXmu -lXt -lX11" LIB4=-lvibrant VIBFLAG="-I/am/Motif/include -DWIN_MOTIF" # to the argument list. Substitute the path to your Motif includes for # /am/Motif/include. # # Motif versions on Solaris 2.x are more complicated because of changes to # the socket I/O. You have explicitly include them. Try: # # make -f makedemo.unx CC="cc -Xa" # VIBLIBS="-L/netopt/X11R5/lib -L/netopt/Motif1.2.2/lib -R/netopt/X11R5/lib:/netopt/Motif1.2.2.lib -lXm -lXmu -lXt -lX11 -lsocket -lnsl -lgen" # LIB4=-lvibrant # VIBFLAG="-I/netopt/X11R5/include -I/netopt/Motif1.2.2/include -DWIN_MOTIF" # # The build for RedHat Linux 2.XX with X11R6 requires: # CC="gcc -ansi" # VIBLIBS="-L/usr/X11R6/lib -lXm -lXpm -lXmu -lXp -lXt -lX11 -lXext" # # NOTE: It is now possible to build using shared libraries, which # consumes significantly less disk space. To date, this has only # been tested using Solaris. To use shared libraries, try: # make ... NCBI_LINKINGLIBDIR=../shlib # NCBI_OTHERLINKOPTIONS=-R`pwd`/../shlib # # default flags for compiling and loading SUFFIXLCL = $(LCL) CFLAGS1 = -c -O LDFLAGS1 = -O CC = cc RAN = ls -l OTHERLIBS = -lm THREAD_OTHERLIBS = -lthread THREAD_OTHERLIBS = THREAD_OBJ = ncbithr.o THREAD_OBJ = VIBLIBS = VIBFLAG = VIB = LIBCOPY = cp -p SRCCOPY = ./ln-if-absent BINCOPY = cp -p SUFFIXENV = unx ASNDIR = asnstat LIB1 = -lncbi LIB2 = -lncbiobj LIB3 = -lncbicdr LIB4 = -lvibrant LIB4 = LIB5 = -lncbiacc LIB20 = -lncbidesk LIB20 = LIB22 = -lncbimmdb LIB23 = -lncbitool NCBI_INCDIR = ../include NCBI_LIBDIR = ../lib NCBI_LINKINGLIBDIR = $(NCBI_LIBDIR) # A kludge which tells the linker not to try to use shared libraries # when linking programs which use main() instead of Nlm_Main() USES_MAIN_KLUDGE = -L$(NCBI_LIBDIR) NCBI_OTHERLINKOPTIONS = CFLAGS = $(CFLAGS1) -I$(NCBI_INCDIR) $(VIBFLAG) LDFLAGS = $(LDFLAGS1) -I$(NCBI_INCDIR) $(NCBI_OTHERLINKOPTIONS) -L$(NCBI_LINKINGLIBDIR) $(VIBFLAG) ENTREZLIBS = $(LIB5) $(LIB3) ## ## some things to make ## # sources needed for versions of demo programs EXE1 = testcore makeset \ getmesh indexpub getpub testobj seqtest \ dosimple asn2ff getseq getfeat checksub asndhuff \ entrcmd errhdr cdscan findspl \ ncbisort fa2htgs fastacmd formatdb blastall blastpgp \ testval seedtop fmerge makemat copymat impala bl2seq \ megablast vecscreen gil2bin tbl2asn blastclust rpsblast \ asn2xml SRC1 = testcore.c makeset.c \ getmesh.c indexpub.c getpub.c testobj.c seqtest.c dosimple.c asn2ff.c \ getseq.c getfeat.c checksub.c asndhuff.c \ entrcmd.c errhdr.c cdscan.c findspl.c \ ncbisort.c fa2htgs.c fastacmd.c formatdb.c blastall.c blastpgp.c \ testval.c seedtop.c fmerge.c makemat.c copymat.c profiles.c bl2seq.c \ megablast.c vecscreen.c gil2bin.c tbl2asn.c blastclust.c rpsblast.c \ asn2xml.c INTERNAL = testgen ## All things to make ## all : ln-if-absent copy .WAIT nocopy ln-if-absent: ../make/ln-if-absent rm -f ln-if-absent ln -s ../make/ln-if-absent . nocopy : sources $(EXE1) $(VIB) sources : $(SRC1) internal: $(INTERNAL) ## To clean out the directory without removing make ## clean : - rm -f *.[acho] .NO_PARALLEL: copy .WAIT: echo Waiting...go ## Implicit actions ## .c.o : $(CC) $(CFLAGS) $< ## get all the source files ## copy : $(SRCCOPY) ../demo/*.* . -$(SRCCOPY) ../internal/*.* . chmod -R ug+rw,o+r . ## make applications ## # testcore testcore : testcore.c $(CC) -o testcore $(LDFLAGS) testcore.c $(LIB4) $(LIB1) $(VIBLIBS) $(OTHERLIBS) # getmesh getmesh : getmesh.c $(CC) -o getmesh $(LDFLAGS) getmesh.c $(LIB4) $(LIB2) $(LIB1) $(VIBLIBS) $(OTHERLIBS) # indexpub indexpub : indexpub.c $(CC) -o indexpub $(LDFLAGS) indexpub.c $(LIB4) $(LIB2) $(LIB1) $(VIBLIBS) $(OTHERLIBS) # makeset makeset : makeset.c $(CC) -o makeset $(LDFLAGS) makeset.c $(LIB4) $(LIB2) $(LIB1) $(VIBLIBS) $(OTHERLIBS) # getpub getpub : getpub.c $(CC) -o getpub $(LDFLAGS) getpub.c $(LIB4) $(LIB2) $(LIB1) $(VIBLIBS) $(OTHERLIBS) # testobj testobj : testobj.c $(CC) -o testobj $(LDFLAGS) testobj.c $(LIB4) $(LIB2) $(LIB1) $(VIBLIBS) $(OTHERLIBS) # dosimple dosimple : dosimple.c $(CC) -o dosimple $(LDFLAGS) dosimple.c $(LIB4) $(LIB2) $(LIB1) $(VIBLIBS) $(OTHERLIBS) # seqtest seqtest : seqtest.c $(CC) -o seqtest $(LDFLAGS) seqtest.c $(LIB4) $(LIB2) $(LIB1) $(VIBLIBS) $(OTHERLIBS) # checksub checksub : checksub.c $(CC) -o checksub $(LDFLAGS) checksub.c $(LIB4) $(LIB2) $(LIB1) $(VIBLIBS) $(OTHERLIBS) # asn2ff asn2ff : asn2ff.c $(CC) -o asn2ff $(LDFLAGS) asn2ff.c $(LIB4) $(LIB2) $(LIB1) $(VIBLIBS) $(OTHERLIBS) # fa2htgs fa2htgs : fa2htgs.c $(CC) -o fa2htgs $(LDFLAGS) fa2htgs.c $(LIB2) $(LIB1) $(VIBLIBS) $(OTHERLIBS) # getseq getseq : getseq.c $(CC) -o getseq $(LDFLAGS) getseq.c $(LIB4) $(ENTREZLIBS) $(LIB2) $(LIB1) $(VIBLIBS) $(OTHERLIBS) # cdscan cdscan : cdscan.c $(CC) -o cdscan $(LDFLAGS) cdscan.c $(LIB4) $(ENTREZLIBS) $(LIB2) $(LIB1) $(VIBLIBS) $(OTHERLIBS) # findspl findspl : findspl.c $(CC) -o findspl $(LDFLAGS) findspl.c $(ENTREZLIBS) $(LIB2) $(LIB1) $(OTHERLIBS) # getfeat getfeat : getfeat.c $(CC) -o getfeat $(LDFLAGS) getfeat.c $(LIB4) $(ENTREZLIBS) $(LIB2) $(LIB1) $(VIBLIBS) $(OTHERLIBS) # errhdr errhdr : errhdr.c $(CC) -o errhdr $(LDFLAGS) errhdr.c $(LIB4) $(LIB2) $(LIB1) $(VIBLIBS) $(OTHERLIBS) # asndhuff asndhuff : asndhuff.c $(CC) -o asndhuff $(LDFLAGS) asndhuff.c $(LIB4) $(ENTREZLIBS) $(LIB2) $(LIB1) $(VIBLIBS) $(OTHERLIBS) # entrcmd entrcmd : entrcmd.c $(CC) -o entrcmd $(LDFLAGS) entrcmd.c $(ENTREZLIBS) $(LIB2) $(LIB1) $(OTHERLIBS) # ncbisort ncbisort : sortcmd.c $(CC) -o ncbisort $(LDFLAGS) sortcmd.c $(LIB23) $(LIB1) $(OTHERLIBS) # testval testval : testval.c $(CC) -o testval $(LDFLAGS) testval.c $(LIB2) $(LIB1) $(OTHERLIBS) # fastacmd fastacmd : fastacmd.c $(CC) -o fastacmd $(LDFLAGS) fastacmd.c $(LIB23) $(LIB2) $(LIB1) $(OTHERLIBS) # formatdb formatdb : formatdb.c $(CC) -o formatdb $(LDFLAGS) formatdb.c $(LIB23) $(LIB2) $(LIB1) $(OTHERLIBS) # fmerge fmerge : fmerge.c $(CC) -o fmerge $(LDFLAGS) fmerge.c $(LIB23) $(LIB2) $(LIB1) $(OTHERLIBS) # blastall blastall : blastall.c $(THREAD_OBJ) $(CC) -o blastall $(LDFLAGS) blastall.c $(THREAD_OBJ) $(LIB23) $(LIB2) $(LIB1) $(OTHERLIBS) $(THREAD_OTHERLIBS) # blastpgp blastpgp : blastpgp.c $(THREAD_OBJ) $(CC) -o blastpgp $(LDFLAGS) blastpgp.c $(THREAD_OBJ) $(LIB23) $(LIB2) $(LIB1) $(OTHERLIBS) $(THREAD_OTHERLIBS) # seedtop seedtop : seedtop.c $(THREAD_OBJ) $(CC) -o seedtop $(LDFLAGS) seedtop.c $(THREAD_OBJ) $(LIB23) $(LIB2) $(LIB1) $(OTHERLIBS) $(THREAD_OTHERLIBS) # makemat makemat : makemat.c $(THREAD_OBJ) $(CC) -o makemat $(LDFLAGS) makemat.c $(THREAD_OBJ) $(LIB23) $(LIB2) $(LIB1) $(OTHERLIBS) $(THREAD_OTHERLIBS) # copymat copymat : copymat.c $(THREAD_OBJ) $(CC) -o copymat $(LDFLAGS) copymat.c $(THREAD_OBJ) $(LIB23) $(LIB2) $(LIB1) $(OTHERLIBS) $(THREAD_OTHERLIBS) # impala impala : profiles.c $(THREAD_OBJ) $(CC) -o impala $(LDFLAGS) profiles.c $(THREAD_OBJ) $(LIB23) $(LIB2) $(LIB1) $(OTHERLIBS) $(THREAD_OTHERLIBS) # bl2seq bl2seq : bl2seq.c $(CC) -o bl2seq $(LDFLAGS) bl2seq.c $(LIB23) $(LIB2) $(LIB1) $(OTHERLIBS) # testgen testgen : testgen.c $(CC) -o testgen $(LDFLAGS) testgen.c $(LIB1) $(OTHERLIBS) #testmem testmem : testmem.c $(CC) -o testmem $(LDFLAGS) testmem.c $(LIB2) $(LIB1) $(OTHERLIBS) #packfilt packfilt : packfilt.c $(CC) -o packfilt $(LDFLAGS) packfilt.c $(LIB2) $(LIB1) $(OTHERLIBS) # megablast megablast : megablast.c $(THREAD_OBJ) $(CC) -o megablast $(LDFLAGS) megablast.c $(THREAD_OBJ) $(LIB23) $(LIB2) $(LIB1) $(OTHERLIBS) $(THREAD_OTHERLIBS) # vecscreen vecscreen : vecscreen.c $(THREAD_OBJ) $(CC) -o vecscreen $(LDFLAGS) vecscreen.c $(THREAD_OBJ) $(LIB23) $(LIB2) $(LIB1) $(OTHERLIBS) $(THREAD_OTHERLIBS) # gil2bin gil2bin : gil2bin.c $(CC) -o gil2bin $(LDFLAGS) gil2bin.c $(LIB23) $(LIB2) $(LIB1) $(OTHERLIBS) # tbl2asn tbl2asn : tbl2asn.c $(CC) -o tbl2asn $(LDFLAGS) tbl2asn.c $(LIB23) $(LIB2) $(LIB1) $(OTHERLIBS) # blastclust blastclust : blastclust.c $(THREAD_OBJ) $(CC) -o blastclust $(LDFLAGS) blastclust.c $(THREAD_OBJ) $(LIB23) $(LIB2) $(LIB1) $(OTHERLIBS) $(THREAD_OTHERLIBS) # rpsblast rpsblast : rpsblast.c $(THREAD_OBJ) $(CC) -o rpsblast $(LDFLAGS) rpsblast.c $(THREAD_OBJ) $(LIB23) $(LIB2) $(LIB1) $(OTHERLIBS) $(THREAD_OTHERLIBS) # asn2xml asn2xml : asn2xml.c $(THREAD_OBJ) $(CC) -o asn2xml $(LDFLAGS) asn2xml.c $(LIB2) $(LIB1) $(OTHERLIBS)